190 Commits (612cea3891460e07460e4c35f184dac9801ecc47)

Author SHA1 Message Date
Alex Selimov 612cea3891 Fix group implementation to abide by new atom type formulation
3 years ago
Alex Selimov a9833f53bf Change bubble code from pressure to ratio
3 years ago
Alex Selimov 044bfe7e7f Fix bug in neighbors
3 years ago
Alex Selimov d5d20e468c Improve dislocation analysis in coarse-grained regions and add character analysis
3 years ago
Alex Selimov 59a0c18779 Change implementation to make atom types a bit better
3 years ago
Alex Selimov f9e7f68676 Add ability for even numbered elements
3 years ago
Alex Selimov de8b4e168a Refactor to remove sub boxes from CACmb code, functionality was not useful and became detrimental for generation of new models
3 years ago
Alex Selimov d9920bbef0 Lots of accumulated fixes to various functionality with cacmb
3 years ago
Alex Selimov 1114a46c60 Add velocity reading to pycac_out files and fix to interp_atoms
3 years ago
Alex Selimov f0fd76f12d Latest working version of cacmb
3 years ago
Alex Selimov fbaca5859b Fix to box bound
3 years ago
Alex Selimov 8eac9be895 Fix stress calculation
3 years ago
Alex Selimov 586c1f002c Another fix to overlap command
3 years ago
Alex Selimov b530b15397 Fix opt_delete overlap
3 years ago
Alex Selimov 7979ad1093 Fix overlap command
3 years ago
Alex Selimov 5c50ce8765 Add first/last flag
3 years ago
Alex Selimov 30dbd3bfc7 Latest working version of cacmb
3 years ago
Alex Selimov a54215d024 Fix all_new option
4 years ago
Alex Selimov 8fd45dc461 Add all new option
4 years ago
Alex Selimov 4b9589e7b3 Fix to dynamic allocation
4 years ago
Alex Selimov c84383b5e1 Makefile.dep
4 years ago
Alex Selimov 66645c8dfc Added opt_bubble
4 years ago
Alex Selimov 8733dfe2e0 Update dependencies for building
4 years ago
Alex Selimov 0e41c7acc9 Lots of updates to cacmb
4 years ago
Alex Selimov b684e0754b Add mode_da and fixes to io
4 years ago
Alex Selimov e3dba9029a Fix bug for writing to .xyz file after delete
4 years ago
Alex Selimov 7ee87c767f Merge in insert command for group option
4 years ago
Alex Selimov 6119366b24 Remove debug statement
4 years ago
Alex Selimov 7a39612164 Add norefine option
4 years ago
Alex Selimov db8428113d Changes to restart file format
4 years ago
Alex Selimov 8298c21503 Updates to metric and emrge and adding read_lmp
4 years ago
Alex Selimov 85135e7c95 More compatability fixes for new version of CAC
4 years ago
Alex Selimov 2e7571cfa5 Update to change style of restart and pycac.out files
4 years ago
Alex Selimov fc8186f3a1 Update to match new cac inputs/output formats
4 years ago
Alex Selimov 90bdc160cb Update to Make file and working compile
4 years ago
Alex Selimov 361c8cae53 Some fixes to opt_disl code
4 years ago
Alex Selimov 77ef2bd063 Update metric file to make it similar to the xyz file in io subroutine
4 years ago
Alex Selimov f9ffd4ddb1 Current working version of insert group
4 years ago
Alex Selimov fe3cc92bc0 Fix problem with set_types
4 years ago
Alex Selimov 5370a5d26b Merge ft--disl
4 years ago
Alex Selimov fa5047b735 Fix to error checking in writing .xyz files
4 years ago
Alex Selimov 1c7c028dd8 Merge branch 'ft--group-shell' into development
4 years ago
Alex Selimov 29df0f9eb2 Fix to opt_group which got the code working
4 years ago
Alex Selimov 2c42520102 Restructure group code, add group shell, and add refinefill option
4 years ago
Alex Selimov 4f3d88b774 Fix to reading and writing .xyz data
4 years ago
Alex Selimov f92e80f9db Added fixes to redef_box and to writing pycac restart files
4 years ago
Alex Selimov 077574ea8d Added disl option
4 years ago
Alex Selimov 0620a07847 Added some calc and metric changes
4 years ago
Alex Selimov 153b95194f Mode calc with tot_virial calculation
4 years ago
Alex Selimov 4dcaddb2cb Manual merge of control box code
4 years ago