245 Commits

Author SHA1 Message Date
Alex Selimov
8e924e1658 Latest updates 2023-02-24 22:36:09 -05:00
Kevin C
d6f11590f3
fixed pycac format output to use correct atom tags, fixed mode_da syntax 2022-05-25 15:06:38 -05:00
Alex Selimov
cffb460e09 Add periodic boundaries to metric calculation and energy to vtk out 2022-05-24 06:52:30 -04:00
Alex Selimov
8fd2a7f65b Updated dislocation analysis and fix to alloy opt_group option 2022-05-10 09:46:46 -04:00
Alex Selimov
612cea3891 Fix group implementation to abide by new atom type formulation 2022-03-09 14:11:03 -05:00
Alex Selimov
a9833f53bf Change bubble code from pressure to ratio 2022-03-09 14:10:13 -05:00
Alex Selimov
044bfe7e7f Fix bug in neighbors 2022-03-09 14:09:00 -05:00
Alex Selimov
d5d20e468c Improve dislocation analysis in coarse-grained regions and add character analysis 2022-03-09 14:08:38 -05:00
Alex Selimov
59a0c18779 Change implementation to make atom types a bit better 2022-03-09 14:07:43 -05:00
Alex Selimov
f9e7f68676 Add ability for even numbered elements 2022-03-09 14:06:09 -05:00
Alex Selimov
a712db3274 Quick fix to README 2022-01-26 20:51:08 -05:00
Alex Selimov
f857c96931 Quick fix to README 2022-01-26 20:49:38 -05:00
Alex Selimov
de8b4e168a Refactor to remove sub boxes from CACmb code, functionality was not useful and became detrimental for generation of new models 2022-01-26 20:48:16 -05:00
Alex Selimov
971e0a5e8d Update to README 2022-01-26 20:45:41 -05:00
Alex Selimov
d9920bbef0 Lots of accumulated fixes to various functionality with cacmb 2022-01-13 12:16:50 -05:00
Alex Selimov
1114a46c60 Add velocity reading to pycac_out files and fix to interp_atoms 2021-09-20 16:30:47 -04:00
Alex Selimov
f0fd76f12d Latest working version of cacmb 2021-09-14 22:33:47 -04:00
Alex Selimov
fbaca5859b Fix to box bound 2021-08-04 13:27:12 -04:00
Alex Selimov
8eac9be895 Fix stress calculation 2021-07-23 10:53:47 -04:00
Alex Selimov
586c1f002c Another fix to overlap command 2021-07-22 15:26:45 -04:00
Alex Selimov
3ad5e0f5e6 Merge branch 'development' of gitlab.com:aselimov/cacmb into development 2021-07-22 15:10:23 -04:00
Alex Selimov
b530b15397 Fix opt_delete overlap 2021-07-22 15:10:18 -04:00
Alex Selimov
0aa4e70653 Update .gitlab-ci.yml 2021-07-22 18:48:40 +00:00
Alex Selimov
80c2fd1d8a Update .gitlab-ci.yml 2021-07-22 18:45:57 +00:00
Alex Selimov
200116665a Update mkdocs.yml 2021-07-22 18:43:40 +00:00
Alex Selimov
20238b5f55 Update mkdocs.yml 2021-07-22 18:39:51 +00:00
Alex Selimov
79fa4b3cb7 Merge branch 'development' of gitlab.com:aselimov/cacmb into development 2021-07-22 14:38:56 -04:00
Alex Selimov
7979ad1093 Fix overlap command 2021-07-22 14:38:49 -04:00
Alex Selimov
3210523eb9 Update .gitlab-ci.yml 2021-07-22 18:30:34 +00:00
Alex Selimov
ecdabe23a6 Update .gitlab-ci.yml 2021-07-22 18:20:27 +00:00
Alex Selimov
5c50ce8765 Add first/last flag 2021-07-22 13:58:05 -04:00
Alex Selimov
30dbd3bfc7 Latest working version of cacmb 2021-07-14 13:11:50 -04:00
Alex Selimov
a54215d024 Fix all_new option 2021-06-26 15:59:16 -04:00
Alex Selimov
8fd45dc461 Add all new option 2021-06-26 15:46:56 -04:00
Alex Selimov
4b9589e7b3 Fix to dynamic allocation 2021-06-25 10:50:54 -04:00
Alex Selimov
c84383b5e1 Makefile.dep 2021-06-20 23:06:59 -04:00
Alex Selimov
66645c8dfc Added opt_bubble 2021-06-18 10:04:54 -04:00
Alex Selimov
8733dfe2e0 Update dependencies for building 2021-06-14 10:24:44 -04:00
Alex Selimov
0e41c7acc9 Lots of updates to cacmb 2021-06-14 10:23:26 -04:00
Alex Selimov
b684e0754b Add mode_da and fixes to io 2021-05-25 13:33:58 -04:00
Alex Selimov
d2aeb5a7f6 Add documentation 2021-04-29 14:45:10 -04:00
Alex Selimov
e3dba9029a Fix bug for writing to .xyz file after delete 2021-04-22 12:49:28 -04:00
Alex Selimov
7ee87c767f Merge in insert command for group option 2021-04-22 01:13:33 -04:00
Alex Selimov
6119366b24 Remove debug statement 2021-04-22 01:11:45 -04:00
Alex Selimov
7a39612164 Add norefine option 2021-04-20 12:30:35 -04:00
Alex Selimov
db8428113d Changes to restart file format 2021-03-25 11:40:47 -04:00
Alex Selimov
8298c21503 Updates to metric and emrge and adding read_lmp 2021-03-19 12:23:57 -04:00
Alex Selimov
85135e7c95 More compatability fixes for new version of CAC 2021-03-06 01:49:29 -05:00
Alex Selimov
2e7571cfa5 Update to change style of restart and pycac.out files 2021-02-16 09:37:25 -05:00
Alex Selimov
fc8186f3a1 Update to match new cac inputs/output formats 2021-02-15 14:33:17 -05:00