--  Specify the leader
--  NOTE: Must happen before plugins are loaded (otherwise wrong leader will be used)
vim.g.mapleader = ";"
vim.g.maplocalleader = ";"

-- [[ Setting options ]]
-- Make line numbers default
vim.opt.number = true
vim.opt.relativenumber = true

-- Disable mouse mode
vim.opt.mouse = ""

-- Don't show the mode, since it's already in status line
vim.opt.showmode = false

-- Case-insensitive searching UNLESS \C or capital in search
vim.opt.ignorecase = true
vim.opt.smartcase = true

-- Keep signcolumn on by default
vim.opt.signcolumn = "yes"

-- Configure how new splits should be opened
vim.opt.splitright = true
vim.opt.splitbelow = true

-- Sets how neovim will display certain whitespace in the editor.
--  See :help 'list'
--  and :help 'listchars'
vim.opt.list = true
vim.opt.listchars = { tab = "» ", trail = "·", nbsp = "␣" }

-- Preview substitutions live, as you type!
vim.opt.inccommand = "split"

-- Show which line your cursor is on
vim.opt.cursorline = true

-- Minimal number of screen lines to keep above and below the cursor.
-- vim.opt.scrolloff = 10

-- General universal settings
vim.opt.sw = 4
vim.opt.ts = 4
vim.opt.expandtab = true
vim.opt.tw = 100
vim.opt.colorcolumn = "+1"
vim.opt.termguicolors = true
vim.opt.pumheight = 5

-- Disable semantic tokens
vim.api.nvim_create_autocmd("LspAttach", {
	callback = function(args)
		local client = vim.lsp.get_client_by_id(args.data.client_id)
		client.server_capabilities.semanticTokensProvider = nil
	end,
})

-- Function to get work count in status line
local function getWords()
	-- the third string here is the string for visual-block mode (^V)
	if vim.fn.mode() == "v" or vim.fn.mode() == "V" or vim.fn.mode() == "" then
		return vim.fn.wordcount().visual_words .. ""
	else
		return vim.fn.wordcount().words .. ""
	end
end
-- [[ Basic Keymaps ]]
--  See `:help vim.keymap.set()`

-- Set highlight on search, but clear on pressing <Esc> in normal mode
vim.opt.hlsearch = true
vim.keymap.set("n", "<Esc>", "<cmd>nohlsearch<CR>")

-- Diagnostic keymaps
vim.keymap.set("n", "[d", vim.diagnostic.goto_prev, { desc = "Go to previous [D]iagnostic message" })
vim.keymap.set("n", "]d", vim.diagnostic.goto_next, { desc = "Go to next [D]iagnostic message" })
vim.keymap.set("n", "<leader>e", vim.diagnostic.open_float, { desc = "Show diagnostic [E]rror messages" })
vim.keymap.set("n", "<leader>q", vim.diagnostic.setloclist, { desc = "Open diagnostic [Q]uickfix list" })

-- Keybinds to make split navigation easier.
--  Use CTRL+<hjkl> to switch between windows
--
--  See `:help wincmd` for a list of all window commands
vim.keymap.set("n", "<C-h>", "<C-w><C-h>", { desc = "Move focus to the left window" })
vim.keymap.set("n", "<C-l>", "<C-w><C-l>", { desc = "Move focus to the right window" })
vim.keymap.set("n", "<C-j>", "<C-w><C-j>", { desc = "Move focus to the lower window" })
vim.keymap.set("n", "<C-k>", "<C-w><C-k>", { desc = "Move focus to the upper window" })
-- Jump to the definition of the word under your cursor.
--  This is where a variable was first declared, or where a function is defined, etc.
--  To jump back, press <C-T>.
vim.keymap.set("n", "gd", vim.lsp.buf.definition, { desc = "" })
-- [[ Basic Autocommands ]]
--  Go back to last edited line when reopening file
vim.api.nvim_create_autocmd("BufRead", {
	callback = function(opts)
		vim.api.nvim_create_autocmd("BufWinEnter", {
			once = true,
			buffer = opts.buf,
			callback = function()
				local ft = vim.bo[opts.buf].filetype
				local last_known_line = vim.api.nvim_buf_get_mark(opts.buf, '"')[1]
				if
					not (ft:match("gitcommit") and ft:match("gitrebase"))
					and last_known_line > 1
					and last_known_line <= vim.api.nvim_buf_line_count(opts.buf)
				then
					vim.api.nvim_feedkeys([[g`"]], "nx", false)
				end
			end,
		})
	end,
})

-- [[ Install `lazy.nvim` plugin manager ]]
--    See `:help lazy.nvim.txt` or https://github.com/folke/lazy.nvim for more info
local lazypath = vim.fn.stdpath("data") .. "/lazy/lazy.nvim"
if not vim.loop.fs_stat(lazypath) then
	local lazyrepo = "https://github.com/folke/lazy.nvim.git"
	vim.fn.system({ "git", "clone", "--filter=blob:none", "--branch=stable", lazyrepo, lazypath })
end ---@diagnostic disable-next-line: undefined-field
vim.opt.rtp:prepend(lazypath)

-- Get user dictionary
local path = vim.fn.stdpath("config") .. "/spell/en.utf-8.add"
local words = {}

for word in io.open(path, "r"):lines() do
	table.insert(words, word)
end
-- [[ Configure and install plugins ]]
--
--  To check the current status of your plugins, run
--    :Lazy
--
--  You can press `?` in this menu for help. Use `:q` to close the window
--
--  To update plugins, you can run
--    :Lazy update
--
--

-- NOTE: Here is where you install your plugins.
require("lazy").setup({

	-- [[ Plugin Specs list ]]
	-- NOTE: Plugins can be added with a link (or for a github repo: 'owner/repo' link).
	{
		"windwp/nvim-autopairs",
		config = function()
			local remap = vim.api.nvim_set_keymap
			local npairs = require("nvim-autopairs")

			npairs.setup({ map_bs = false, map_cr = false })

			_G.MUtils = {}

			MUtils.CR = function()
				if vim.fn.pumvisible() ~= 0 then
					if vim.fn.complete_info({ "selected" }).selected ~= -1 then
						return npairs.esc("<c-y>")
					else
						return npairs.esc("<c-e>") .. npairs.autopairs_cr()
					end
				else
					return npairs.autopairs_cr()
				end
			end
			remap("i", "<cr>", "v:lua.MUtils.CR()", { expr = true, noremap = true })

			MUtils.BS = function()
				if vim.fn.pumvisible() ~= 0 and vim.fn.complete_info({ "mode" }).mode == "eval" then
					return npairs.esc("<c-e>") .. npairs.autopairs_bs()
				else
					return npairs.autopairs_bs()
				end
			end
			remap("i", "<bs>", "v:lua.MUtils.BS()", { expr = true, noremap = true })

			-- put this to setup function and press <a-e> to use fast_wrap
			npairs.setup({
				fast_wrap = {},
			})

			-- change default fast_wrap
			npairs.setup({
				fast_wrap = {
					map = "<M-e>",
					chars = { "{", "[", "(", '"', "'" },
					pattern = [=[[%'%"%>%]%)%}%,]]=],
					end_key = "$",
					before_key = "h",
					after_key = "l",
					cursor_pos_before = true,
					keys = "qwertyuiopzxcvbnmasdfghjkl",
					manual_position = true,
					highlight = "Search",
					highlight_grey = "Comment",
				},
			})

			npairs.remove_rule("`")
		end,
	},
	"christoomey/vim-tmux-navigator",
	"kana/vim-textobj-user",
	{
		"GCBallesteros/vim-textobj-hydrogen",
		dependencies = {
			"kana/vim-textobj-user",
		},
	},
	"godlygeek/tabular",
	"tpope/vim-sleuth",
	{
		"codersauce/runst.nvim",
		lazy = false,
		opts = {},
		config = function()
			require("runst").setup()
		end,
	},
	{
		"Vigemus/iron.nvim",
		ft = { "python" },
		config = function()
			local iron = require("iron.core")
			local view = require("iron.view")

			iron.setup({
				config = {
					-- Whether a repl should be discarded or not
					scratch_repl = true,
					-- Your repl definitions come here
					repl_definition = {
						python = {
							-- Can be a table or a function that
							-- returns a table (see below)
							command = "ipython --no-autoindent",
						},
					},
					-- How the repl window will be displayed
					-- See below for more information
					repl_open_cmd = require("iron.view").bottom(20),
				},
				-- Iron doesn't set keymaps by default anymore.
				-- You can set them here or manually add keymaps to the functions in iron.core
				keymaps = {
					visual_send = "<leader>sc",
					send_file = "<leader>sf",
					send_line = "<leader>sl",
					cr = "<leader>s<cr>",
					interrupt = "<leader>s<space>",
					exit = "<leader>sq",
					clear = "<leader>cl",
				},
				-- If the highlight is on, you can change how it looks
				-- For the available options, check nvim_set_hl
				highlight = {
					italic = true,
				},
				ignore_blank_lines = true, -- ignore blank lines when sending visual select lines
			})
			vim.keymap.set("n", ";rs", "<cmd>IronRepl<cr>")
			vim.keymap.set("n", ";rr", "<cmd>IronRestart<cr>")
			vim.keymap.set("n", ";rf", "<cmd>IronFocus<cr>")
			vim.keymap.set("n", ";rh", "<cmd>IronHide<cr>")

			repl_open_cmd = "horizontal bot 20 split"
		end,
	},
	"ixru/nvim-markdown",
	"KeitaNakamura/tex-conceal.vim",
	"christoomey/vim-tmux-navigator",
	"skywind3000/asyncrun.vim",
	-- NOTE: Plugins can specify dependencies.
	--
	-- The dependencies are proper plugin specifications as well - anything
	-- you do for a plugin at the top level, you can do for a dependency.
	--
	-- Use the `dependencies` key to specify the dependencies of a particular plugin
	{ -- Fuzzy Finder (files, lsp, etc)
		"nvim-telescope/telescope.nvim",
		event = "VeryLazy",
		branch = "0.1.x",
		dependencies = {
			"nvim-lua/plenary.nvim",
			-- Useful for getting pretty icons, but requires special font.
			--  If you already have a Nerd Font, or terminal set up with fallback fonts
			--  you can enable this
			{ "nvim-tree/nvim-web-devicons" },
			{ "nvim-telescope/telescope-live-grep-args.nvim" },
		},
		config = function()
			-- Telescope is a fuzzy finder that comes with a lot of different things that
			-- it can fuzzy find! It's more than just a "file finder", it can search
			-- many different aspects of Neovim, your workspace, LSP, and more!
			--
			-- The easiest way to use telescope, is to start by doing something like:
			--  :Telescope help_tags
			--
			-- After running this command, a window will open up and you're able to
			-- type in the prompt window. You'll see a list of help_tags options and
			-- a corresponding preview of the help.
			--
			-- Two important keymaps to use while in telescope are:
			--  - Insert mode: <c-/>
			--  - Normal mode: ?
			--
			-- This opens a window that shows you all of the keymaps for the current
			-- telescope picker. This is really useful to discover what Telescope can
			-- do as well as how to actually do it!

			-- [[ Configure Telescope ]]
			-- See `:help telescope` and `:help telescope.setup()`
			require("telescope").setup({
				-- You can put your default mappings / updates / etc. in here
				--  All the info you're looking for is in `:help telescope.setup()`
				--
				defaults = vim.tbl_extend("force", require("telescope.themes").get_ivy(), {
					path_display = { "smart" },
				}),
			})

			pcall(require("telescope").load_extension("live_grep_args"))
			local builtin = require("telescope.builtin")
			vim.keymap.set("n", "<C-g>", require("telescope").extensions.live_grep_args.live_grep_args)
			vim.keymap.set(
				"x",
				"<C-g>",
				"\"zy:lua require('telescope').extensions.live_grep_args.live_grep_args(require('telescope.themes').get_ivy({}))<cr><c-r>z"
			)
			vim.keymap.set("n", "<C-f>", builtin.find_files)
		end,
	},
	{ -- LSP Configuration & Plugins
		"neovim/nvim-lspconfig",
		opts = {
			autoformat = false,
		},
		dependencies = {
			-- Automatically install LSPs and related tools to stdpath for neovim
			"williamboman/mason.nvim",
			"williamboman/mason-lspconfig.nvim",
			"WhoIsSethDaniel/mason-tool-installer.nvim",

			-- Useful status updates for LSP.
			-- NOTE: `opts = {}` is the same as calling `require('fidget').setup({})`
			{ "j-hui/fidget.nvim", opts = {} },
		},
		config = function()
			vim.api.nvim_create_autocmd("LspAttach", {
				group = vim.api.nvim_create_augroup("kickstart-lsp-attach", { clear = true }),
				callback = function(event)
					-- NOTE: Remember that lua is a real programming language, and as such it is possible
					-- to define small helper and utility functions so you don't have to repeat yourself
					-- many times.
					--
					-- In this case, we create a function that lets us more easily define mappings specific
					-- for LSP related items. It sets the mode, buffer and description for us each time.
					local map = function(keys, func, desc)
						vim.keymap.set("n", keys, func, { buffer = event.buf, desc = "LSP: " .. desc })
					end

					-- Find references for the word under your cursor.
					map("gr", require("telescope.builtin").lsp_references, "[G]oto [R]eferences")

					-- Jump to the implementation of the word under your cursor.
					--  Useful when your language has ways of declaring types without an actual implementation.
					map("<leader>I", require("telescope.builtin").lsp_implementations, "[G]oto [I]mplementation")

					-- Jump to the type of the word under your cursor.
					--  Useful when you're not sure what type a variable is and you want to see
					--  the definition of its *type*, not where it was *defined*.
					map("<leader>D", require("telescope.builtin").lsp_type_definitions, "Type [D]efinition")

					-- Fuzzy find all the symbols in your current document.
					--  Symbols are things like variables, functions, types, etc.
					map("<leader>ds", require("telescope.builtin").lsp_document_symbols, "[D]ocument [S]ymbols")

					-- Fuzzy find all the symbols in your current workspace
					--  Similar to document symbols, except searches over your whole project.
					map(
						"<leader>ws",
						require("telescope.builtin").lsp_dynamic_workspace_symbols,
						"[W]orkspace [S]ymbols"
					)

					-- Rename the variable under your cursor
					--  Most Language Servers support renaming across files, etc.
					map("<leader>rn", vim.lsp.buf.rename, "[R]e[n]ame")

					-- Execute a code action, usually your cursor needs to be on top of an error
					-- or a suggestion from your LSP for this to activate.
					map("<leader>ca", vim.lsp.buf.code_action, "[C]ode [A]ction")

					-- Opens a popup that displays documentation about the word under your cursor
					--  See `:help K` for why this keymap
					map("K", vim.lsp.buf.hover, "Hover Documentation")

					-- WARN: This is not Goto Definition, this is Goto Declaration.
					--  For example, in C this would take you to the header
					map("gD", vim.lsp.buf.declaration, "[G]oto [D]eclaration")

					-- The following two autocommands are used to highlight references of the
					-- word under your cursor when your cursor rests there for a little while.
					--    See `:help CursorHold` for information about when this is executed
					--
					-- When you move your cursor, the highlights will be cleared (the second autocommand).
					local client = vim.lsp.get_client_by_id(event.data.client_id)
					if client and client.server_capabilities.documentHighlightProvider then
						vim.api.nvim_create_autocmd({ "CursorHold", "CursorHoldI" }, {
							buffer = event.buf,
							callback = vim.lsp.buf.document_highlight,
						})

						vim.api.nvim_create_autocmd({ "CursorMoved", "CursorMovedI" }, {
							buffer = event.buf,
							callback = vim.lsp.buf.clear_references,
						})
					end
				end,
			})

			-- LSP servers and clients are able to communicate to each other what features they support.
			--  By default, Neovim doesn't support everything that is in the LSP Specification.
			--  When you add nvim-cmp, luasnip, etc. Neovim now has *more* capabilities.
			--  So, we create new capabilities with nvim cmp, and then broadcast that to the servers.
			local capabilities = vim.lsp.protocol.make_client_capabilities()
			capabilities = vim.tbl_deep_extend("force", capabilities, require("cmp_nvim_lsp").default_capabilities())

			-- Enable the following language servers
			--  Feel free to add/remove any LSPs that you want here. They will automatically be installed.
			--
			--  Add any additional override configuration in the following tables. Available keys are:
			--  - cmd (table): Override the default command used to start the server
			--  - filetypes (table): Override the default list of associated filetypes for the server
			--  - capabilities (table): Override fields in capabilities. Can be used to disable certain LSP features.
			--  - settings (table): Override the default settings passed when initializing the server.
			--        For example, to see the options for `lua_ls`, you could go to: https://luals.github.io/wiki/settings/
			local servers = {
				clangd = {
					filetypes = {
						"c",
						"cpp",
					},
				},
				taplo = {},
				yamlls = {},
				-- gopls = {},
				jdtls = {
					filetypes = { "java" },
					settings = {
						java = {
							format = {
								settings = {
									url = "~/RedTop.xml",
								},
							},
						},
					},
				},
				pyright = {},
				fortls = {},
				bashls = { dependencies = "shellcheck" },
				rust_analyzer = {
					settings = {
						["rust-analyzer"] = {
							check = {
								command = "clippy",
							},
							rustfmt = {
								extraArgs = { "+nightly" },
							},
						},
					},
				},
				arduino_language_server = {},
				ltex = {
					settings = {
						ltex = {
							enabled = { "latex", "tex", "bib", "markdown" },
							language = "auto",
							diagnosticSeverity = "information",
							sentenceCacheSize = 2000,
							latex = {
								commands = {
									["\\hypertarget"] = "dummy",
								},
							},
							dictionary = (function()
								-- For dictionary, search for files in the runtime to have
								-- and include them as externals the format for them is
								-- dict/{LANG}.txt
								--
								-- Also add dict/default.txt to all of them
								local files = {}
								for _, file in ipairs(vim.api.nvim_get_runtime_file("dict/*", true)) do
									local lang = vim.fn.fnamemodify(file, ":t:r")
									local fullpath = vim.fs.normalize(file, ":p")
									files[lang] = { ":" .. fullpath }
								end

								if files.default then
									for lang, _ in pairs(files) do
										if lang ~= "default" then
											vim.list_extend(files[lang], files.default)
										end
									end
									files.default = nil
								end
								return files
							end)(),
						},
					},
				},
				lua_ls = {
					-- cmd = {...},
					-- filetypes { ...},
					-- capabilities = {},
					settings = {
						Lua = {
							runtime = { version = "LuaJIT" },
							workspace = {
								checkThirdParty = false,
								-- Tells lua_ls where to find all the Lua files that you have loaded
								-- for your neovim configuration.
								library = {
									"${3rd}/luv/library",
									unpack(vim.api.nvim_get_runtime_file("", true)),
								},
								-- If lua_ls is really slow on your computer, you can try this instead:
								-- library = { vim.env.VIMRUNTIME },
							},
							-- You can toggle below to ignore Lua_LS's noisy `missing-fields` warnings
							-- diagnostics = { disable = { 'missing-fields' } },
						},
					},
				},
			}

			-- Ensure the servers and tools above are installed
			--  To check the current status of installed tools and/or manually install
			--  other tools, you can run
			--    :Mason
			--
			--  You can press `g?` for help in this menu
			require("mason").setup()

			-- You can add other tools here that you want Mason to install
			-- for you, so that they are available from within Neovim.
			local ensure_installed = vim.tbl_keys(servers or {})
			vim.list_extend(ensure_installed, {
				"stylua", -- Used to format lua code
				"black",
				"clang-format",
				"ormolu",
				"beautysh",
				"latexindent",
				"prettier",
			})
			require("mason-tool-installer").setup({ ensure_installed = ensure_installed })

			require("mason-lspconfig").setup({
				handlers = {
					function(server_name)
						local server = servers[server_name] or {}
						require("lspconfig")[server_name].setup({
							cmd = server.cmd,
							on_init = function(client)
								client.offset_encoding = "utf-8"
							end,
							settings = server.settings,
							filetypes = server.filetypes,
							-- This handles overriding only values explicitly passed
							-- by the server configuration above. Useful when disabling
							-- certain features of an LSP (for example, turning off formatting for tsserver)
							capabilities = vim.tbl_deep_extend("force", {}, capabilities, server.capabilities or {}),
						})
					end,
				},
			})
		end,
	},

	{ -- Autoformat
		"stevearc/conform.nvim",
		setup = {
			formatters = {
				black = {
					command = "black",
					prepend_args = { "--line-length", "100" },
				},
			},
		},
		opts = {
			notify_on_error = false,
			format_on_save = {
				timeout_ms = 500,
				lsp_fallback = false,
			},
			formatters_by_ft = {
				lua = { "stylua" },
				-- Conform can also run multiple formatters sequentially
				python = { "black" },
				cpp = { "clang-format" },
				c = { "clang-format" },
				sh = { "beautysh" },
				tex = { "latexindent" },
				yaml = { "prettier" },
			},
		},
	},

	{ -- Autocompletion
		"hrsh7th/nvim-cmp",
		event = "InsertEnter",
		dependencies = {
			-- Snippet Engine & its associated nvim-cmp source
			{
				"L3MON4D3/LuaSnip",
				build = (function()
					-- Build Step is needed for regex support in snippets
					-- This step is not supported in many windows environments
					-- Remove the below condition to re-enable on windows
					if vim.fn.has("win32") == 1 or vim.fn.executable("make") == 0 then
						return
					end
					return "make install_jsregexp"
				end)(),
				config = function()
					require("luasnip.loaders.from_snipmate").lazy_load({ paths = "./snippets" })
					local ls = require("luasnip")
					-- some shorthands...
					local snip = ls.snippet
					local node = ls.snippet_node
					local text = ls.text_node
					local insert = ls.insert_node
					local func = ls.function_node
					local choice = ls.choice_node
					local dynamicn = ls.dynamic_node

					ls.add_snippets(nil, {
						python = {
							snip({
								trig = "imp",
								namr = "Imports",
								dscr = "Comments for imports",
							}, {
								text({ "# Core modules", "" }),
								insert(1),
								text({ "", "# Non-core modules", "" }),
								insert(2),
								text({ "", "# SEI modules", "" }),
								insert(3),
							}),
						},
						tex = {
							snip({
								trig = "input",
								namr = "Input Cell",
								dscr = "Cell for SEIInputTable",
							}, {
								text({ "\\hypertarget{" }),
								insert(1),
								text({ "}{" }),
								insert(2),
								text({ "} & \\SEICell{", "\t" }),
								insert(3),
								text({ "", "}\\\\", "" }),
							}),
						},
						markdown = {
							snip({
								trig = "img",
								namr = "image",
								dscr = "Markdown img",
							}, {
								text({ "![" }),
								insert(1),
								text("]("),
								insert(2),
								text(")"),
							}),
							snip({
								trig = "header",
								namr = "header",
								dscr = "Yaml header for markdown notes",
							}, {
								text({ "---", "" }),
								text("title: "),
								insert(1),
								text({ "", "author: Alex Selimov", "" }),
								text("tags: ["),
								insert(2),
								text({ "]", "", "" }),
								text({ "---", "" }),
							}),
						},
					})
				end,
			},
			"saadparwaiz1/cmp_luasnip",
			"hrsh7th/cmp-nvim-lsp",
			"hrsh7th/cmp-path",
		},
		config = function()
			-- See `:help cmp`
			local cmp = require("cmp")
			local luasnip = require("luasnip")
			luasnip.config.setup({})
			cmp.setup({
				snippet = {
					expand = function(args)
						luasnip.lsp_expand(args.body)
					end,
				},
				completion = { completeopt = "menu,menuone,noinsert" },

				-- For an understanding of why these mappings were
				-- chosen, you will need to read `:help ins-completion`
				--
				-- No, but seriously. Please read `:help ins-completion`, it is really good!
				mapping = cmp.mapping.preset.insert({
					-- Select the [n]ext item
					["<C-n>"] = cmp.mapping.select_next_item(),
					-- Select the [p]revious item
					["<C-p>"] = cmp.mapping.select_prev_item(),

					-- Accept ([y]es) the completion.
					--  This will auto-import if your LSP supports it.
					--  This will expand snippets if the LSP sent a snippet.
					["<C-y>"] = cmp.mapping.confirm({ select = true }),

					["<leader>j"] = cmp.mapping(function()
						if luasnip.expand_or_locally_jumpable() then
							luasnip.expand_or_jump()
						end
					end, { "i", "s" }),
					["<leader>k"] = cmp.mapping(function()
						if luasnip.locally_jumpable(-1) then
							luasnip.jump(-1)
						end
					end, { "i", "s" }),
				}),
				sources = {
					{ name = "nvim_lsp" },
					{ name = "luasnip" },
					{ name = "path" },
				},
			})
		end,
		snippet = {
			expand = function(args)
				local luasnip = require("luasnip")
				if not luasnip then
					return
				end
				luasnip.lsp_expand(args.body)
			end,
		},
	},

	{ -- You can easily change to a different colorscheme.
		-- Change the name of the colorscheme plugin below, and then
		-- change the command in the config to whatever the name of that colorscheme is
		--
		-- If you want to see what colorschemes are already installed, you can use `:Telescope colorscheme`
		"morhetz/gruvbox",
		lazy = false, -- make sure we load this during startup if it is your main colorscheme
		priority = 1000, -- make sure to load this before all the other start plugins
		config = function()
			-- Load the colorscheme here
			vim.cmd.colorscheme("gruvbox")
		end,
	},

	-- Highlight todo, notes, etc in comments
	{ "folke/todo-comments.nvim", dependencies = { "nvim-lua/plenary.nvim" }, opts = { signs = false } },

	{ -- Collection of various small independent plugins/modules
		-- Simple and easy statusline.
		--  You could remove this setup call if you don't like it,
		--  and try some other statusline plugin
		"echasnovski/mini.nvim",
		config = function()
			require("mini.statusline").setup({
				content = {
					active = function()
						local mode, mode_hl = MiniStatusline.section_mode({ trunc_width = 120 })
						local git = MiniStatusline.section_git({ trunc_width = 75 })
						local diagnostics = MiniStatusline.section_diagnostics({ trunc_width = 75 })
						local filename = MiniStatusline.section_filename({ trunc_width = 140 })
						local fileinfo = MiniStatusline.section_fileinfo({ trunc_width = 120 })
						local location = MiniStatusline.section_location({ trunc_width = 75 })
						local search = MiniStatusline.section_searchcount({ trunc_width = 75 })
						local words = getWords()
						return MiniStatusline.combine_groups({

							{ hl = mode_hl, strings = { mode } },
							{ hl = "MiniStatuslineDevinfo", strings = { git, diagnostics } },
							"%<", -- Mark general truncate point
							{ hl = "MiniStatuslineFilename", strings = { filename } },
							"%=", -- End left alignment
							{ hl = "MiniStatuslineFileinfo", strings = { fileinfo } },
							{ hl = "MiniStatuslineFileinfo", strings = { words } },
							{ hl = mode_hl, strings = { search, location } },
						})
					end,
				},
			})
		end,
	},

	{ -- Highlight, edit, and navigate code
		"nvim-treesitter/nvim-treesitter",
		build = ":TSUpdate",
		config = function()
			-- [[ Configure Treesitter ]] See `:help nvim-treesitter`

			---@diagnostic disable-next-line: missing-fields
			require("nvim-treesitter.configs").setup({
				ensure_installed = { "bash", "c", "html", "lua", "markdown", "vim", "vimdoc" },
				-- Autoinstall languages that are not installed
				auto_install = true,
				highlight = { enable = false },
				indent = { enable = false },
			})

			-- There are additional nvim-treesitter modules that you can use to interact
			-- with nvim-treesitter. You should go explore a few and see what interests you:
			--
			--    - Incremental selection: Included, see :help nvim-treesitter-incremental-selection-mod
			--    - Show your current context: https://github.com/nvim-treesitter/nvim-treesitter-context
			--    - Treesitter + textobjects: https://github.com/nvim-treesitter/nvim-treesitter-textobjects
		end,
	},
	"airblade/vim-gitgutter",
})
--Set rustfmt command
vim.g["rustfmt_command"] = "rustfmt +nightly"
--Disable semantic highlights
for _, group in ipairs(vim.fn.getcompletion("@lsp", "highlight")) do
	vim.api.nvim_set_hl(0, group, {})
end

--Testing scorch highlighting
vim.api.nvim_create_autocmd({ "BufRead", "BufNewFile" }, {
	pattern = "*.scorch",
	callback = function()
		vim.bo.filetype = "scorch"
	end,
})
--
--Testing scorch highlighting
vim.api.nvim_create_autocmd({ "BufRead", "BufNewFile" }, {
	pattern = "*.sep",
	callback = function()
		vim.bo.filetype = "sep"
	end,
})
-- Commands to disable formatting
require("conform").setup({
	format_on_save = function(bufnr)
		-- Disable with a global or buffer-local variable
		if vim.g.disable_autoformat or vim.b[bufnr].disable_autoformat then
			return
		end
		return { timeout_ms = 500, lsp_fallback = true }
	end,
})

vim.api.nvim_create_user_command("FormatDisable", function(args)
	if args.bang then
		-- FormatDisable! will disable formatting just for this buffer
		vim.b.disable_autoformat = true
	else
		vim.g.disable_autoformat = true
	end
end, {
	desc = "Disable autoformat-on-save",
	bang = true,
})
vim.api.nvim_create_user_command("FormatEnable", function()
	vim.b.disable_autoformat = false
	vim.g.disable_autoformat = false
end, {
	desc = "Re-enable autoformat-on-save",
})