Merge pull request #174 from pubs/fix/173

Fix 173 and release as 0.8.2
main
Fabien C. Y. Benureau 6 years ago committed by GitHub
commit c8f1ff71f2
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@ -38,6 +38,9 @@ matrix:
- python3 -m venv env - python3 -m venv env
- source env/bin/activate - source env/bin/activate
allow_failures:
- python: 3.3
# command to install dependencies # command to install dependencies
install: install:
- python --version - python --version

@ -0,0 +1 @@
include readme.md

@ -3,7 +3,7 @@
## Current master ## Current master
[Full Changelog](https://github.com/pubs/pubs/compare/v0.8.1...master) [Full Changelog](https://github.com/pubs/pubs/compare/v0.8.2...master)
### Implemented enhancements ### Implemented enhancements
@ -13,6 +13,15 @@
### Fixed bugs ### Fixed bugs
## [v0.8.2](https://github.com/pubs/pubs/compare/v0.8.1...v0.8.2) (2018-12-04)
Fixes install on python2.
### Fixed bugs
- Fix missing readme.md for python2 pip install. [(#174)](https://github.com/pubs/pubs/pull/174)
## [v0.8.1](https://github.com/pubs/pubs/compare/v0.8.0...v0.8.1) (2018-08-28) ## [v0.8.1](https://github.com/pubs/pubs/compare/v0.8.0...v0.8.1) (2018-08-28)
A hotfix release. All users of 0.8.0 are urged to upgrade. A hotfix release. All users of 0.8.0 are urged to upgrade.

@ -1 +1 @@
__version__ = '0.8.1' __version__ = '0.8.2'

@ -16,20 +16,23 @@ Pubs is built with the following principles in mind:
## Installation ## Installation
You can install the latest stable version of `pubs` through Pypi, with: You can install the latest stable version of `pubs` through Pypi, with:
```
pip install pubs pip install pubs
```
Alternatively, you can: Alternatively, you can:
- install the latest development version with pip: - install the latest development version with pip:
```
pip install --upgrade git+https://github.com/pubs/pubs pip install --upgrade git+https://github.com/pubs/pubs
```
- clone the repository and install it manually: - clone the repository and install it manually:
```
git clone https://github.com/pubs/pubs git clone https://github.com/pubs/pubs
cd pubs cd pubs
python setup.py install [--user] python setup.py install [--user]
```
Arch Linux users can also use the [pubs-git](https://aur.archlinux.org/packages/pubs-git/) AUR package. Arch Linux users can also use the [pubs-git](https://aur.archlinux.org/packages/pubs-git/) AUR package.
@ -37,28 +40,34 @@ Arch Linux users can also use the [pubs-git](https://aur.archlinux.org/packages/
## Getting started ## Getting started
Create your library (by default, goes to `~/.pubs/`). Create your library (by default, goes to `~/.pubs/`).
```
pubs init pubs init
```
Import existing data from bibtex (pubs will try to automatically copy documents defined as 'file' in bibtex): Import existing data from bibtex (pubs will try to automatically copy documents defined as 'file' in bibtex):
```
pubs import path/to/collection.bib pubs import path/to/collection.bib
```
or for a .bib file containing a single reference: or for a .bib file containing a single reference:
```
pubs add reference.bib -d article.pdf pubs add reference.bib -d article.pdf
```
pubs can also automatically retrieve the bibtex from a doi: pubs can also automatically retrieve the bibtex from a doi:
```
pubs add -D 10.1007/s00422-012-0514-6 -d article.pdf pubs add -D 10.1007/s00422-012-0514-6 -d article.pdf
```
or an ISBN (dashes are ignored): or an ISBN (dashes are ignored):
```
pubs add -I 978-0822324669 -d article.pdf pubs add -I 978-0822324669 -d article.pdf
```
or an arXiv id (automatically downloading arXiv article is in the works): or an arXiv id (automatically downloading arXiv article is in the works):
```
pubs add -X math/9501234 -d article.pdf pubs add -X math/9501234 -d article.pdf
```
## References always up-to-date ## References always up-to-date
@ -66,8 +75,9 @@ or an arXiv id (automatically downloading arXiv article is in the works):
If you use latex, you can automatize references, by running `pubs export > references.bib` each time you update your library, which also fits well as a `makefile` rule. If you use latex, you can automatize references, by running `pubs export > references.bib` each time you update your library, which also fits well as a `makefile` rule.
This ensures that your reference file is always up-to-date; you can cite a paper in your manuscript a soon as you add it in pubs. This means that if you have, for instance, a doi on a webpage, you only need to do: This ensures that your reference file is always up-to-date; you can cite a paper in your manuscript a soon as you add it in pubs. This means that if you have, for instance, a doi on a webpage, you only need to do:
```
pubs add -D 10.1007/s00422-012-0514-6 pubs add -D 10.1007/s00422-012-0514-6
```
and then add `\cite{Loeb_2012}` in your manuscript. After exporting the bibliography, the citation will correctly appear in your compiled pdf. and then add `\cite{Loeb_2012}` in your manuscript. After exporting the bibliography, the citation will correctly appear in your compiled pdf.
@ -75,23 +85,25 @@ and then add `\cite{Loeb_2012}` in your manuscript. After exporting the bibliogr
## Document management ## Document management
You can attach a document to a reference: You can attach a document to a reference:
```
pubs add Loeb2012_downloaded.pdf Loeb_2012 pubs add Loeb2012_downloaded.pdf Loeb_2012
```
And open your documents automatically from the command line: And open your documents automatically from the command line:
```
pubs doc open Loeb_2012 pubs doc open Loeb_2012
pubs doc open --with lp Loeb_2012 # Opens the document with `lp` to actually print it. pubs doc open --with lp Loeb_2012 # Opens the document with `lp` to actually print it.
```
## Customization ## Customization
Pubs is designed to interact well with your command line tool chain. Pubs is designed to interact well with your command line tool chain.
You can add custom commands to pubs by defining aliases in your configuration file (make sure that the alias plugin is activated in your configuration by using `pubs conf`). You can add custom commands to pubs by defining aliases in your configuration file (make sure that the alias plugin is activated in your configuration by using `pubs conf`).
```ini
[[alias]] [[alias]]
evince = open --with evince evince = open --with evince
count = !pubs list -k "$@" | wc -l count = !pubs list -k "$@" | wc -l
```
The first command defines a new subcommand: `pubs open --with evince` will be executed when `pubs evince` is typed. The first command defines a new subcommand: `pubs open --with evince` will be executed when `pubs evince` is typed.
The second starts with a bang: `!`, and is treated as a shell command. If other arguments are provided they are passed to the shell command as in a script. In the example above the `count` alias can take arguments that are be passed to the `pubs list -k` command, hence enabling filters like `pubs count year:2012`. The second starts with a bang: `!`, and is treated as a shell command. If other arguments are provided they are passed to the shell command as in a script. In the example above the `count` alias can take arguments that are be passed to the `pubs list -k` command, hence enabling filters like `pubs count year:2012`.
@ -102,14 +114,14 @@ The second starts with a bang: `!`, and is treated as a shell command. If other
For autocompletion to work, you need the [argcomplete](https://argcomplete.readthedocs.io) Python package, and Bash 4.2 or newer. For activating *bash* or *tsch* completion, consult the [argcomplete documentation](https://argcomplete.readthedocs.io/en/latest/#global-completion). For autocompletion to work, you need the [argcomplete](https://argcomplete.readthedocs.io) Python package, and Bash 4.2 or newer. For activating *bash* or *tsch* completion, consult the [argcomplete documentation](https://argcomplete.readthedocs.io/en/latest/#global-completion).
For *zsh* completion, the global activation is not supported but bash completion compatibility can be used for pubs. For that, add the following to your `.zshrc`: For *zsh* completion, the global activation is not supported but bash completion compatibility can be used for pubs. For that, add the following to your `.zshrc`:
```shell
# Enable and load bashcompinit # Enable and load bashcompinit
autoload -Uz compinit bashcompinit autoload -Uz compinit bashcompinit
compinit compinit
bashcompinit bashcompinit
# Argcomplete explicit registration for pubs # Argcomplete explicit registration for pubs
eval "$(register-python-argcomplete pubs)" eval "$(register-python-argcomplete pubs)"
```
## Need more help ? ## Need more help ?

@ -4,6 +4,7 @@ import unittest
from setuptools import setup from setuptools import setup
with open('pubs/version.py') as f: with open('pubs/version.py') as f:
exec(f.read()) # defines __version__ exec(f.read()) # defines __version__
@ -11,11 +12,13 @@ here = os.path.abspath(os.path.dirname(__file__))
with open(os.path.join(here, 'readme.md'), 'r') as fd: with open(os.path.join(here, 'readme.md'), 'r') as fd:
long_description = fd.read() long_description = fd.read()
def pubs_test_suite(): def pubs_test_suite():
test_loader = unittest.TestLoader() test_loader = unittest.TestLoader()
test_suite = test_loader.discover('tests', pattern='test_*.py') test_suite = test_loader.discover('tests', pattern='test_*.py')
return test_suite return test_suite
setup( setup(
name='pubs', name='pubs',
version=__version__, version=__version__,
@ -40,6 +43,8 @@ setup(
], ],
}, },
include_package_data=True,
install_requires=['pyyaml', 'bibtexparser>=1.0', 'python-dateutil', 'six', install_requires=['pyyaml', 'bibtexparser>=1.0', 'python-dateutil', 'six',
'requests', 'configobj', 'beautifulsoup4', 'feedparser'], 'requests', 'configobj', 'beautifulsoup4', 'feedparser'],
extras_require={'autocompletion': ['argcomplete'], extras_require={'autocompletion': ['argcomplete'],
@ -54,7 +59,7 @@ setup(
'Intended Audience :: Science/Research', 'Intended Audience :: Science/Research',
], ],
test_suite= 'tests', test_suite='tests',
tests_require=['pyfakefs>=3.4', 'mock', 'ddt'], tests_require=['pyfakefs>=3.4', 'mock', 'ddt'],
# in order to avoid 'zipimport.ZipImportError: bad local file header' # in order to avoid 'zipimport.ZipImportError: bad local file header'

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