commands updated to new config, new repo

papers/commands/add_cmd.py

@@ -1,11 +1,11 @@
 from .. import repo
 from .. import files
 from ..paper import Paper, NoDocumentFile, get_bibentry_from_string
-from .. import configs
+from ..configs import config
 from .helpers import add_paper_with_docfile, extract_doc_path_from_bibdata
 
 
-def parser(subparsers, config):
+def parser(subparsers):
     parser = subparsers.add_parser('add', help='add a paper to the repository')
     parser.add_argument('-b', '--bibfile',
                         help='bibtex, bibtexml or bibyaml file', default=None)
@@ -19,14 +19,14 @@ def parser(subparsers, config):
     return parser
 
 
-def command(config, ui, bibfile, docfile, tags, copy):
+def command(ui, bibfile, docfile, tags, copy):
     """
     :param bibfile: bibtex file (in .bib, .bibml or .yaml format.
     :param docfile: path (no url yet) to a pdf or ps file
     """
     if copy is None:
-        copy = config.get(configs.MAIN_SECTION, 'import-copy')
-    rp = repo.Repository.from_directory(config)
+        copy = config().import_copy
+    rp = repo.Repository(config())
     if bibfile is None:
         cont = True
         bibstr = ''

papers/commands/add_library_cmd.py

@@ -1,18 +1,18 @@
 from .. import repo
 from ..paper import Paper
+from ..configs import config
 
-
-def parser(subparsers, config):
+def parser(subparsers):
     parser = subparsers.add_parser('add_library',
             help='add a set of papers to the repository')
     parser.add_argument('bibfile', help='bibtex, bibtexml or bibyaml file')
     return parser
 
 
-def command(config, ui, bibfile):
+def command(ui, bibfile):
     """
     :param bibtex       bibtex file (in .bib, .bibml or .yaml format.
     """
-    rp = repo.Repository.from_directory(config)
+    rp = repo.Repository.from_directory(config())
     for p in Paper.many_from_bib(bibfile):
         rp.add_paper(p)

papers/commands/attach_cmd.py

@@ -1,10 +1,10 @@
 from .. import repo
-from .. import configs
+from ..configs import config
 from .helpers import (add_references_argument, parse_reference,
                       add_docfile_to_paper)
 
 
-def parser(subparsers, config):
+def parser(subparsers):
     parser = subparsers.add_parser('attach',
             help='attach a document to an existing paper')
     parser.add_argument('-c', '--copy', action='store_true', default=None,
@@ -16,14 +16,14 @@ def parser(subparsers, config):
     return parser
 
 
-def command(config, ui, copy, reference, document):
+def command(ui, copy, reference, document):
     """
     :param bibfile: bibtex file (in .bib, .bibml or .yaml format.
     :param docfile: path (no url yet) to a pdf or ps file
     """
     if copy is None:
-        copy = config.get(configs.MAIN_SECTION, 'import-copy')
-    rp = repo.Repository.from_directory(config)
+        copy = config().import_copy
+    rp = repo.Repository(config())
     key = parse_reference(ui, rp, reference)
     paper = rp.get_paper(key)
     try:

papers/commands/edit_cmd.py

@@ -2,9 +2,10 @@ from ..files import editor_input
 from .. import repo
 from ..paper import get_bibentry_from_string, get_safe_metadata_from_content
 from .helpers import add_references_argument, parse_reference
+from ..configs import config
 
 
-def parser(subparsers, config):
+def parser(subparsers):
     parser = subparsers.add_parser('edit',
             help='open the paper bibliographic file in an editor')
     parser.add_argument('-m', '--meta', action='store_true', default=False,
@@ -13,8 +14,8 @@ def parser(subparsers, config):
     return parser
 
 
-def command(config, ui, meta, reference):
-    rp = repo.Repository.from_directory(config)
+def command(ui, meta, reference):
+    rp = repo.Repository.from_directory(config())
     key = parse_reference(ui, rp, reference)
     paper = rp.get_paper(key)
     to_edit = 'bib'
@@ -25,7 +26,7 @@ def command(config, ui, meta, reference):
         content = f.read()
     while True:
         # Get new content from user
-        content = editor_input(config, content)
+        content = editor_input(config().edit_cmd, content)
         new_key = key
         bib = None
         metadata = None

papers/commands/export_cmd.py

@@ -5,9 +5,9 @@ from pybtex.database import BibliographyData
 from .. import repo
 from .. import files
 from .helpers import parse_references, add_references_argument
+from ..configs import config
 
-
-def parser(subparsers, config):
+def parser(subparsers):
     parser = subparsers.add_parser('export',
             help='export bibliography')
     parser.add_argument('-f', '--bib-format', default='bibtex',
@@ -16,11 +16,11 @@ def parser(subparsers, config):
     return parser
 
 
-def command(config, ui, bib_format, references):
+def command(ui, bib_format, references):
     """
     :param bib_format       (in 'bibtex', 'yaml')
     """
-    rp = repo.Repository.from_directory(config)
+    rp = repo.Repository.from_directory(config())
     papers = [rp.get_paper(c)
               for c in parse_references(ui, rp, references)]
     if len(papers) == 0:

papers/commands/helpers.py

@@ -42,7 +42,7 @@ def extract_doc_path_from_bibdata(paper, ui):
 
 def parse_reference(ui, rp, ref):
     try:
-        return rp.citekey_from_ref(ref)
+        return rp.ref2citekey(ref)
     except InvalidReference:
         ui.error("no paper with reference: %s."
                     % color.dye(ref, color.citekey))

papers/commands/import_cmd.py

@@ -1,10 +1,9 @@
 from .. import repo
 from ..paper import Paper
 from .helpers import add_paper_with_docfile, extract_doc_path_from_bibdata
-from .. import configs
+from ..configs import config
 
-
-def parser(subparsers, config):
+def parser(subparsers):
     parser = subparsers.add_parser('import',
             help='import paper(s) to the repository')
     parser.add_argument('bibpath',
@@ -16,13 +15,13 @@ def parser(subparsers, config):
     return parser
 
 
-def command(config, ui, bibpath, copy):
+def command(ui, bibpath, copy):
     """
     :param bibpath: path (no url yet) to a bibliography file
     """
     if copy is None:
-        copy = config.get(configs.MAIN_SECTION, 'import-copy')
-    rp = repo.Repository.from_directory(config)
+        copy = config().import_copy
+    rp = repo.Repository.from_directory(config())
     # Extract papers from bib
     papers = Paper.many_from_path(bibpath, fatal=False)
     for p in papers:

papers/commands/init_cmd.py

@@ -3,10 +3,11 @@
 import os
 
 from ..repo import Repository
-from .. import configs
+from ..configs import config
 from .. import color
+from .. import files
 
-def parser(subparsers, config):
+def parser(subparsers):
     parser = subparsers.add_parser('init',
                                    help="initialize the papers directory")
     parser.add_argument('-p', '--path', default=None,
@@ -17,21 +18,19 @@ def parser(subparsers, config):
     return parser
 
 
-def command(config, ui, path, doc_dir):
+def command(ui, path, doc_dir):
     """Create a .papers directory"""
-    if path is None:
-        papersdir = config.get('papers', 'papers-directory')
-    else:
-        papersdir = os.path.join(os.getcwd(), path)
-        configs.add_and_write_option('papers', 'papers-directory', papersdir)
-    if os.path.exists(papersdir):
-        if len(os.listdir(papersdir)) > 0:
+    if path is not None:
+        config().papers_dir = files.clean_path(os.getcwd(), path)
+    ppd = config().papers_dir
+    if os.path.exists(ppd) and len(os.listdir(ppd)) > 0:
             ui.error('directory {} is not empty.'.format(
-                                 color.dye(papersdir, color.filepath)))
+                                 color.dye(ppd, color.filepath)))
             ui.exit()
 
     ui.print_('Initializing papers in {}.'.format(
-              color.dye(papersdir, color.filepath)))
-    repo = Repository()
-    repo.init(papersdir)  # Creates directories
-    repo.save()  # Saves empty repository description
+              color.dye(ppd, color.filepath)))
+
+    repo = Repository(config(), load = False)
+    repo.save()
+    config().save()

papers/commands/list_cmd.py

@@ -2,9 +2,10 @@ from .. import pretty
 from .. import repo
 from .. import color
 from . import helpers
+from ..configs import config
 
 
-def parser(subparsers, config):
+def parser(subparsers):
     parser = subparsers.add_parser('list', help="list papers")
     parser.add_argument('-k', '--citekeys-only', action='store_true',
             default=False, dest='citekeys',
@@ -14,8 +15,8 @@ def parser(subparsers, config):
     return parser
 
 
-def command(config, ui, citekeys, query):
-    rp = repo.Repository.from_directory(config)
+def command(ui, citekeys, query):
+    rp = repo.Repository(config())
     papers = [(n, p) for n, p in enumerate(rp.all_papers())
               if test_paper(query, p)]
     ui.print_('\n'.join(helpers.paper_oneliner(p, n = n, citekey_only = citekeys) for n, p in papers))

papers/commands/open_cmd.py

@@ -2,12 +2,12 @@ import subprocess
 
 from .. import repo
 from ..paper import NoDocumentFile
-from .. import configs
+from ..configs import config
 from .. import color
 from .helpers import add_references_argument, parse_reference
 
 
-def parser(subparsers, config):
+def parser(subparsers):
     parser = subparsers.add_parser('open',
             help='open the paper in a pdf viewer')
     parser.add_argument('-w', '--with', dest='with_command', default=None,
@@ -16,12 +16,12 @@ def parser(subparsers, config):
     return parser
 
 
-def command(config, ui, with_command, reference):
+def command(ui, with_command, reference):
     rp = repo.Repository.from_directory(config)
     key = parse_reference(ui, rp, reference)
     paper = rp.get_paper(key)
     if with_command is None:
-        with_command = config.get(configs.MAIN_SECTION, 'open-cmd')
+        with_command = config().open_cmd
     try:
         filepath = paper.get_document_path()
         subprocess.Popen([with_command, filepath])

papers/commands/remove_cmd.py

@@ -1,12 +1,12 @@
 from .. import repo
 from .. import color
-from .. import configs
+from ..configs import config
 from .helpers import add_references_argument, parse_references
 
 from ..events import RemoveEvent
 
 
-def parser(subparsers, config):
+def parser(subparsers):
     parser = subparsers.add_parser('remove', help='removes a paper')
     parser.add_argument('-f', '--force', action='store_true', default=None,
     help="does not prompt for confirmation.")
@@ -14,8 +14,8 @@ def parser(subparsers, config):
     return parser
 
 
-def command(config, ui, force, references):
-    rp = repo.Repository.from_directory(config)
+def command(ui, force, references):
+    rp = repo.Repository(config())
     citekeys = parse_references(ui, rp, references)
     if force is None:
         are_you_sure = ("Are you sure you want to delete paper(s) [%s]"
@@ -24,7 +24,7 @@ def command(config, ui, force, references):
         sure = ui.input_yn(question=are_you_sure, default='n')
     if force or sure:
         for c in citekeys:
-            rmevent = RemoveEvent(config, ui, c)
+            rmevent = RemoveEvent(ui, c)
             rmevent.send()
 
-            rp.remove(c)
+            rp.remove_paper(c)

papers/commands/tag_cmd.py

@@ -19,8 +19,9 @@ The different use cases are :
 
 from ..repo import Repository, InvalidReference
 from . import helpers
+from ..configs import config
 
-def parser(subparsers, config):
+def parser(subparsers):
     parser = subparsers.add_parser('tag', help="add, remove and show tags")
     parser.add_argument('referenceOrTag', nargs='?', default = None,
                         help='reference to the paper (citekey or number), or '
@@ -43,12 +44,12 @@ def _parse_tags(s):
     for m in re.finditer(r'[+-]', s):
         if m.start() == last:
             if last != 0:
-                raise ValueError, 'could not match tag expression'
+                raise ValueError('could not match tag expression')
         else:
             tags.append(s[last:(m.start())])
         last = m.start()
     if last == len(s):
-        raise ValueError, 'could not match tag expression'
+        raise ValueError('could not match tag expression')
     else:
         tags.append(s[last:])
     return tags
@@ -63,16 +64,16 @@ def _tag_groups(tags):
             minus_tags.append(tag[1:])
     return set(plus_tags), set(minus_tags)
 
-def command(config, ui, referenceOrTag, tags):
+def command(ui, referenceOrTag, tags):
     """Add, remove and show tags"""
-    rp = Repository.from_directory(config)
+    rp = Repository(config())
 
     if referenceOrTag is None:
         for tag in rp.get_tags():
             ui.print_(tag)
     else:
         try:
-            citekey = rp.citekey_from_ref(referenceOrTag)
+            citekey = rp.ref2citekey(referenceOrTag)
             p = rp.get_paper(citekey)
             if tags is None:
                 ui.print_(' '.join(p.tags))

papers/commands/update_cmd.py

@@ -1,12 +1,12 @@
 from .. import repo
 from .. import color
 
-def parser(subparsers, config):
+def parser(subparsers):
     parser = subparsers.add_parser('update', help='update the repository to the lastest format')
     return parser
 
 
-def command(config, ui):
+def command(ui):
     rp = repo.Repository.from_directory(config)
     msg = ("You should backup the paper directory {} before continuing."
            "Continue ?").format(color.dye(rp.papersdir, color.filepath))

papers/commands/websearch_cmd.py

@@ -2,7 +2,7 @@ import webbrowser
 import urllib
 
 
-def parser(subparsers, config):
+def parser(subparsers):
     parser = subparsers.add_parser('websearch',
                                    help="launch a search on Google Scholar")
     parser.add_argument("search_string", nargs = '*',
@@ -10,7 +10,7 @@ def parser(subparsers, config):
     return parser
 
 
-def command(config, ui, search_string):
+def command(ui, search_string):
     print search_string
     url = ("https://scholar.google.fr/scholar?q=%s&lr="
            % (urllib.quote_plus(' '.join(search_string))))