Added DOI regex function to utils.py which is called in add_cmd.py
upon specifying a new DOI. DOI validation applies directly on
argument parsing by using a custom argparse.Action.
The implementation is designed to be robust to filesystems having integers
or nanosecond stat time.
Added a requirements.txt file for the tests:
`pip install -r tests/requirements.txt` to install the necessary packages
to run the tests.
Fix#13, Fix#14
The default behavior for commands is now to only catch exceptions that
must be handled specifically. This includes outputting a context
dependant message, cleaning up, etc. All other exceptions will be
handled by the ui.
- Fix the previous default to 'None' (the string 'None', not None)
in the config.
- Adds support for using the $EDITOR when none is defined in the condif.
- Use ui.editor instead of content.editor in the add commnand.
Add a theme section in the configuration file to allow users to
set the colors used by different elements of the ui.
Improve the update mechanism so that incremental changes to the
configuration file can be incorporated.
The update is done transparently, and displays a warning message explaining the change.
All the update machinery has been moved to the new update module.
It depends on configobj, is cleaner and simpler than the previous implementation.
It adds comments in the config file, and type verification.
Related: #18
`print_out()` is replaced by `message()`, that redirect the output to
the stdout controlled by the PrintUI instance. Other than that, can be
used the same way as `print()`.
First this brings a change to the paper API: the terminology of bibdata
and bibentry is clarified: now bibentry is a dictionary of the form
{citekey: bibdata} where bibdata corresponds to the actual dictionary of
bibliographic fields and values {author: ..., year: ...}.
Now bibentry is an attribute of the paper object that is generated from
citekey and bibdata.
This commit fixes all tests in particular an issue with citekey in
bibentry not updated.
Also removes prints in tests and deprecated assertEquals.
Usecase tests now fail if the command ask for unexpected inputs.
Removes queries for user input in attach and add commands (for deletion
of a copied document file). The input was not coherent with tests and is
annoying.
- Document are added through repository method.
- Correct handling of the copy option.
- Does not check if document exists yet.
- Does not bypass copy=False if an url is given. Should it?
- Currently the document is actually pushed twice (not optimal).
Note: in current state the non-copy addition of document is not
implemented. This commit also adds the raise of a NotImplementedError if
the behavior is requested.
- edit command fails correctly on unknown citekey,
- init command and filebroker use content module to check paths,
- fix wrong docfile in testrepo,
- list command does not fail on None added date (unknown add dates are
older than everything else). Also adds relevant test.
Open command was not using system_path to ensure user expansion.
Testrepo was using pubsdir:// instead of docsdir://. Although not
directly used in test this was misleading and incoherent.
Also fixes missing system_path in filebroker.
Paths should be normalized through content.system_path before any actual
operation on files. This is in particular taken care of in content
functions check_file, check_dir, write_file, and read_file.
The Repository rename_paper method has been updated. The citekey update
and syncronization with citekey in the bibdata should be handled in a
sane manner inside the Paper class.
* only bibtex format is supported
* all tests except test_repo.py and edit test pass
* edit and update commands were not updated
* removed --format argument from export, only bibtex is supported.
Bill Flynn
Olivier Mangin
Dennis Wilson
Fabien C. Y. Benureau
73
Olivier Mangin