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import os
import subprocess
import tempfile
import yaml
from .color import colored
try:
import pybtex
import pybtex.database
import pybtex.database.input
import pybtex.database.input.bibtex
import pybtex.database.input.bibtexml
import pybtex.database.input.bibyaml
import pybtex.database.output
import pybtex.database.output.bibtex
import pybtex.database.output.bibtexml
import pybtex.database.output.bibyaml
except ImportError:
print(colored('error', 'error')
+ ': you need to install Pybtex; try running \'pip install'
'pybtex\' or \'easy_install pybtex\'')
_papersdir = None
BIB_EXTENSIONS = ['.bib', '.bibyaml', '.bibml', '.yaml']
FORMATS = {'bib': pybtex.database.input.bibtex,
'xml': pybtex.database.input.bibtexml,
'yml': pybtex.database.input.bibyaml,
'yaml': pybtex.database.input.bibyaml,
'bibyaml': pybtex.database.input.bibyaml}
def clean_path(path):
return os.path.abspath(os.path.expanduser(path))
def find_papersdir():
"""Find .papers directory in this directory and the parent directories"""
global _papersdir
if _papersdir is None:
curdir = os.path.abspath('')
while curdir != '':
curdir_path = os.path.join(clean_path(curdir), '.papers')
if (os.path.exists(curdir_path) and os.path.isdir(curdir_path)):
_papersdir = curdir + '/.papers'
curdir = ''
if curdir == '/':
curdir = '~'
elif curdir == '~':
curdir = ''
else:
curdir = os.path.split(curdir)[0]
if _papersdir is None:
print (colored('error', 'error')
+ ': no papers repo found in this directory or in '
'any parent directory.')
exit(-1)
return _papersdir
def name_from_path(fullpdfpath, verbose=False):
name, ext = os.path.splitext(os.path.split(fullpdfpath)[1])
if verbose:
if ext != '.pdf' and ext != '.ps':
print(colored('warning', 'yellow')
+ '{: extension {ext} not recognized'.format(
ext=colored(ext, 'cyan')))
return name, ext
def check_file(path, fail=False):
if fail:
if not os.path.exists(path):
raise(IOError, "File does not exist: %s." % path)
if not os.path.isfile(path):
raise(IOError, "%s is not a file." % path)
return True
else:
return os.path.exists(path) and os.path.isfile(path)
# yaml I/O
def write_yamlfile(filepath, datamap):
try:
with open(filepath, 'w') as f:
yaml.dump(datamap, f)
except IOError:
print(colored('error', 'error')
+ ': impossible to read file {}'.format(
colored(filepath, 'filepath')))
exit(-1)
def read_yamlfile(filepath):
check_file(filepath, fail=True)
try:
with open(filepath, 'r') as f:
return yaml.load(f)
except IOError:
print(colored('error', 'error')
+ ': impossible to read file {}'.format(
colored(filepath, 'filepath')))
exit(-1)
def load_bibdata(filename, filepath):
return load_externalbibfile(filepath)
def save_bibdata(bib_data, filepath):
with open(filepath, 'w') as f:
parser = pybtex.database.output.bibyaml.Writer()
parser.write_stream(bib_data, f)
def save_meta(meta_data, filepath):
write_yamlfile(filepath, meta_data)
def load_meta(filepath):
return read_yamlfile(filepath)
# specific to bibliography data
def load_externalbibfile(fullbibpath):
check_file(fullbibpath, fail=True)
filename, ext = os.path.splitext(os.path.split(fullbibpath)[1])
if ext[1:] in FORMATS.keys():
with open(fullbibpath) as f:
return parse_bibdata(f, ext[1:])
else:
print(colored('error', 'error')
+ ': {} not recognized format for bibliography'.format(
colored(ext, 'cyan')))
exit(-1)
def parse_bibdata(content, format_):
"""Parse bib data from string.
:content: stream
:param format_: (bib|xml|yml)
"""
parser = FORMATS[format_].Parser()
return parser.parse_stream(content)
def editor_input(editor, initial=""):
"""Use an editor to get input"""
with tempfile.NamedTemporaryFile(suffix=".tmp", delete=False) as temp_file:
tfile_name = temp_file.name
temp_file.write(initial)
temp_file.flush()
subprocess.call([editor, tfile_name])
with open(tfile_name) as temp_file:
content = temp_file.read()
os.remove(tfile_name)
return content