LICENSE

@@ -0,0 +1,117 @@
+GNU GENERAL PUBLIC LICENSE
+Version 2, June 1991
+
+Copyright (C) 1989, 1991 Free Software Foundation, Inc.
+51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+
+Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed.
+
+Preamble
+
+The licenses for most software are designed to take away your freedom to share and change it. By contrast, the GNU General Public License is intended to guarantee your freedom to share and change free software--to make sure the software is free for all its users. This General Public License applies to most of the Free Software Foundation's software and to any other program whose authors commit to using it. (Some other Free Software Foundation software is covered by the GNU Lesser General Public License instead.) You can apply it to your programs, too.
+
+When we speak of free software, we are referring to freedom, not price. Our General Public Licenses are designed to make sure that you have the freedom to distribute copies of free software (and charge for this service if you wish), that you receive source code or can get it if you want it, that you can change the software or use pieces of it in new free programs; and that you know you can do these things.
+
+To protect your rights, we need to make restrictions that forbid anyone to deny you these rights or to ask you to surrender the rights. These restrictions translate to certain responsibilities for you if you distribute copies of the software, or if you modify it.
+
+For example, if you distribute copies of such a program, whether gratis or for a fee, you must give the recipients all the rights that you have. You must make sure that they, too, receive or can get the source code. And you must show them these terms so they know their rights.
+
+We protect your rights with two steps: (1) copyright the software, and (2) offer you this license which gives you legal permission to copy, distribute and/or modify the software.
+
+Also, for each author's protection and ours, we want to make certain that everyone understands that there is no warranty for this free software. If the software is modified by someone else and passed on, we want its recipients to know that what they have is not the original, so that any problems introduced by others will not reflect on the original authors' reputations.
+
+Finally, any free program is threatened constantly by software patents. We wish to avoid the danger that redistributors of a free program will individually obtain patent licenses, in effect making the program proprietary. To prevent this, we have made it clear that any patent must be licensed for everyone's free use or not licensed at all.
+
+The precise terms and conditions for copying, distribution and modification follow.
+
+TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
+
+0. This License applies to any program or other work which contains a notice placed by the copyright holder saying it may be distributed under the terms of this General Public License. The "Program", below, refers to any such program or work, and a "work based on the Program" means either the Program or any derivative work under copyright law: that is to say, a work containing the Program or a portion of it, either verbatim or with modifications and/or translated into another language. (Hereinafter, translation is included without limitation in the term "modification".) Each licensee is addressed as "you".
+
+Activities other than copying, distribution and modification are not covered by this License; they are outside its scope. The act of running the Program is not restricted, and the output from the Program is covered only if its contents constitute a work based on the Program (independent of having been made by running the Program). Whether that is true depends on what the Program does.
+
+1. You may copy and distribute verbatim copies of the Program's source code as you receive it, in any medium, provided that you conspicuously and appropriately publish on each copy an appropriate copyright notice and disclaimer of warranty; keep intact all the notices that refer to this License and to the absence of any warranty; and give any other recipients of the Program a copy of this License along with the Program.
+
+You may charge a fee for the physical act of transferring a copy, and you may at your option offer warranty protection in exchange for a fee.
+
+2. You may modify your copy or copies of the Program or any portion of it, thus forming a work based on the Program, and copy and distribute such modifications or work under the terms of Section 1 above, provided that you also meet all of these conditions:
+
+     a) You must cause the modified files to carry prominent notices stating that you changed the files and the date of any change.
+
+     b) You must cause any work that you distribute or publish, that in whole or in part contains or is derived from the Program or any part thereof, to be licensed as a whole at no charge to all third parties under the terms of this License.
+
+     c) If the modified program normally reads commands interactively when run, you must cause it, when started running for such interactive use in the most ordinary way, to print or display an announcement including an appropriate copyright notice and a notice that there is no warranty (or else, saying that you provide a warranty) and that users may redistribute the program under these conditions, and telling the user how to view a copy of this License. (Exception: if the Program itself is interactive but does not normally print such an announcement, your work based on the Program is not required to print an announcement.)
+
+These requirements apply to the modified work as a whole. If identifiable sections of that work are not derived from the Program, and can be reasonably considered independent and separate works in themselves, then this License, and its terms, do not apply to those sections when you distribute them as separate works. But when you distribute the same sections as part of a whole which is a work based on the Program, the distribution of the whole must be on the terms of this License, whose permissions for other licensees extend to the entire whole, and thus to each and every part regardless of who wrote it.
+
+Thus, it is not the intent of this section to claim rights or contest your rights to work written entirely by you; rather, the intent is to exercise the right to control the distribution of derivative or collective works based on the Program.
+
+In addition, mere aggregation of another work not based on the Program with the Program (or with a work based on the Program) on a volume of a storage or distribution medium does not bring the other work under the scope of this License.
+
+3. You may copy and distribute the Program (or a work based on it, under Section 2) in object code or executable form under the terms of Sections 1 and 2 above provided that you also do one of the following:
+
+     a) Accompany it with the complete corresponding machine-readable source code, which must be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or,
+
+     b) Accompany it with a written offer, valid for at least three years, to give any third party, for a charge no more than your cost of physically performing source distribution, a complete machine-readable copy of the corresponding source code, to be distributed under the terms of Sections 1 and 2 above on a medium customarily used for software interchange; or,
+
+     c) Accompany it with the information you received as to the offer to distribute corresponding source code. (This alternative is allowed only for noncommercial distribution and only if you received the program in object code or executable form with such an offer, in accord with Subsection b above.)
+
+The source code for a work means the preferred form of the work for making modifications to it. For an executable work, complete source code means all the source code for all modules it contains, plus any associated interface definition files, plus the scripts used to control compilation and installation of the executable. However, as a special exception, the source code distributed need not include anything that is normally distributed (in either source or binary form) with the major components (compiler, kernel, and so on) of the operating system on which the executable runs, unless that component itself accompanies the executable.
+
+If distribution of executable or object code is made by offering access to copy from a designated place, then offering equivalent access to copy the source code from the same place counts as distribution of the source code, even though third parties are not compelled to copy the source along with the object code.
+
+4. You may not copy, modify, sublicense, or distribute the Program except as expressly provided under this License. Any attempt otherwise to copy, modify, sublicense or distribute the Program is void, and will automatically terminate your rights under this License. However, parties who have received copies, or rights, from you under this License will not have their licenses terminated so long as such parties remain in full compliance.
+
+5. You are not required to accept this License, since you have not signed it. However, nothing else grants you permission to modify or distribute the Program or its derivative works. These actions are prohibited by law if you do not accept this License. Therefore, by modifying or distributing the Program (or any work based on the Program), you indicate your acceptance of this License to do so, and all its terms and conditions for copying, distributing or modifying the Program or works based on it.
+
+6. Each time you redistribute the Program (or any work based on the Program), the recipient automatically receives a license from the original licensor to copy, distribute or modify the Program subject to these terms and conditions. You may not impose any further restrictions on the recipients' exercise of the rights granted herein. You are not responsible for enforcing compliance by third parties to this License.
+
+7. If, as a consequence of a court judgment or allegation of patent infringement or for any other reason (not limited to patent issues), conditions are imposed on you (whether by court order, agreement or otherwise) that contradict the conditions of this License, they do not excuse you from the conditions of this License. If you cannot distribute so as to satisfy simultaneously your obligations under this License and any other pertinent obligations, then as a consequence you may not distribute the Program at all. For example, if a patent license would not permit royalty-free redistribution of the Program by all those who receive copies directly or indirectly through you, then the only way you could satisfy both it and this License would be to refrain entirely from distribution of the Program.
+
+If any portion of this section is held invalid or unenforceable under any particular circumstance, the balance of the section is intended to apply and the section as a whole is intended to apply in other circumstances.
+
+It is not the purpose of this section to induce you to infringe any patents or other property right claims or to contest validity of any such claims; this section has the sole purpose of protecting the integrity of the free software distribution system, which is implemented by public license practices. Many people have made generous contributions to the wide range of software distributed through that system in reliance on consistent application of that system; it is up to the author/donor to decide if he or she is willing to distribute software through any other system and a licensee cannot impose that choice.
+
+This section is intended to make thoroughly clear what is believed to be a consequence of the rest of this License.
+
+8. If the distribution and/or use of the Program is restricted in certain countries either by patents or by copyrighted interfaces, the original copyright holder who places the Program under this License may add an explicit geographical distribution limitation excluding those countries, so that distribution is permitted only in or among countries not thus excluded. In such case, this License incorporates the limitation as if written in the body of this License.
+
+9. The Free Software Foundation may publish revised and/or new versions of the General Public License from time to time. Such new versions will be similar in spirit to the present version, but may differ in detail to address new problems or concerns.
+
+Each version is given a distinguishing version number. If the Program specifies a version number of this License which applies to it and "any later version", you have the option of following the terms and conditions either of that version or of any later version published by the Free Software Foundation. If the Program does not specify a version number of this License, you may choose any version ever published by the Free Software Foundation.
+
+10. If you wish to incorporate parts of the Program into other free programs whose distribution conditions are different, write to the author to ask for permission. For software which is copyrighted by the Free Software Foundation, write to the Free Software Foundation; we sometimes make exceptions for this. Our decision will be guided by the two goals of preserving the free status of all derivatives of our free software and of promoting the sharing and reuse of software generally.
+
+NO WARRANTY
+
+11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
+
+12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES.
+
+END OF TERMS AND CONDITIONS
+
+How to Apply These Terms to Your New Programs
+
+If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms.
+
+To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found.
+
+     one line to give the program's name and an idea of what it does. Copyright (C) yyyy name of author
+
+     This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
+
+     This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
+
+     You should have received a copy of the GNU General Public License along with this program; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA. Also add information on how to contact you by electronic and paper mail.
+
+If the program is interactive, make it output a short notice like this when it starts in an interactive mode:
+
+     Gnomovision version 69, Copyright (C) year name of author Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w' and `show c'; they could even be mouse-clicks or menu items--whatever suits your program.
+
+You should also get your employer (if you work as a programmer) or your school, if any, to sign a "copyright disclaimer" for the program, if necessary. Here is a sample; alter the names:
+
+     Yoyodyne, Inc., hereby disclaims all copyright interest in the program `Gnomovision' (which makes passes at compilers) written by James Hacker.
+
+signature of Ty Coon, 1 April 1989 Ty Coon, President of Vice

README.md

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+# typesetting
+
+Scripts for typesetting from 

article.md

@@ -1,30 +0,0 @@
----
-title: "<++>"
-abstract: ""
-author: Alex Selimov
-
-
-###
-### Bibliography settings
-###
-link-citations: true
-
-
-###
-### Formatting settings
-###
-documentclass: article
-fontsize: 12pt
-figPrefix: figure
-#geometry: margin=1.0in
-geometry: "left=3cm,right=3cm,top=2cm,bottom=2cm"
-header-includes:
-    - \usepackage{mathpazo}
-    - \usepackage{amsmath}
-urlcolor: blue
-
----
-
-
-\newpage
-# References

article.tex

@@ -1,68 +0,0 @@
-\documentclass[11pt]{article}
-
-\usepackage{enumerate} % Custom item numbers for enumerations
-\usepackage[ruled]{algorithm2e} % Algorithms
-\usepackage[framemethod=tikz]{mdframed} % Allows defining custom boxed/framed environments
-\usepackage{lineno}
-\usepackage[english]{babel}
-\usepackage{csquotes}
-\usepackage[url=false,doi=false,isbn=false, sorting=none]{biblatex}
-\bibliography{/home/aselimov/latex/references}
-\setcounter{secnumdepth}{0}
-\usepackage{setspace}
-\usepackage{subcaption}
-
-\usepackage{geometry} % Required for adjusting page dimensions and margins
-
-\geometry{
-	paper=a4paper, % Paper size, change to letterpaper for US letter size
-	top=2.5cm, % Top margin
-	bottom=3cm, % Bottom margin
-	left=2.5cm, % Left margin
-	right=2.5cm, % Right margin
-	headheight=14pt, % Header height
-	footskip=1.5cm, % Space from the bottom margin to the baseline of the footer
-	headsep=1.2cm, % Space from the top margin to the baseline of the header
-	%showframe, % Uncomment to show how the type block is set on the page
-}
-\newcommand{\ols}[1]{\mskip.5\thinmuskip\overline{\mskip-.5\thinmuskip {#1} \mskip-.5\thinmuskip}\mskip.5\thinmuskip} % overline short
-
-
-
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%Title %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-\title{<++>} % Title of the assignment
-
-\author{Alex Selimov} % Author name and email address
-
-\date{} % University, school and/or department name(s) and a date
-%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-
-\begin{document}
-\maketitle
-%%
-%% Start line numbering here if you want
-%%
-\linenumbers
-\doublespacing
-% The Appendices part is started with the command \appendix;
-%% appendix sections are then done as normal sections
-%% \appendix
-
-%% \section{}
-%% \label{}
-
-%% References
-%%
-%% Following citation commands can be used in the body text:
-%% Usage of \cite is as follows:
-%%   \cite{key}          ==>>  [#]
-%%   \cite[chap. 2]{key} ==>>  [#, chap. 2]
-%%   \citet{key}         ==>>  Author [#]
-
-%% References with bibTeX database:
-
-
-
-\printbibliography
-\end{document}
-

cleanLatex

@@ -1,3 +0,0 @@
-#!/bin/bash
-
-rm $1.aux $1.bcf $1.snm $1.blg $1.toc $1.log $1.nav $1.out $1.run.xml $1.bbl

csl/acs.csl

@@ -1,394 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<style xmlns="http://purl.org/net/xbiblio/csl" class="in-text" version="1.0" demote-non-dropping-particle="sort-only">
-  <info>
-    <title>IEEE</title>
-    <id>http://www.zotero.org/styles/ieee</id>
-    <link href="http://www.zotero.org/styles/ieee" rel="self"/>
-    <link href="https://ieeeauthorcenter.ieee.org/wp-content/uploads/IEEE-Reference-Guide.pdf" rel="documentation"/>
-    <link href="https://journals.ieeeauthorcenter.ieee.org/your-role-in-article-production/ieee-editorial-style-manual/" rel="documentation"/>
-    <author>
-      <name>Michael Berkowitz</name>
-      <email>mberkowi@gmu.edu</email>
-    </author>
-    <contributor>
-      <name>Julian Onions</name>
-      <email>julian.onions@gmail.com</email>
-    </contributor>
-    <contributor>
-      <name>Rintze Zelle</name>
-      <uri>http://twitter.com/rintzezelle</uri>
-    </contributor>
-    <contributor>
-      <name>Stephen Frank</name>
-      <uri>http://www.zotero.org/sfrank</uri>
-    </contributor>
-    <contributor>
-      <name>Sebastian Karcher</name>
-    </contributor>
-    <contributor>
-      <name>Giuseppe Silano</name>
-      <email>g.silano89@gmail.com</email>
-      <uri>http://giuseppesilano.net</uri>
-    </contributor>
-    <contributor>
-      <name>Patrick O'Brien</name>
-    </contributor>
-    <contributor>
-      <name>Brenton M. Wiernik</name>
-    </contributor>
-    <category citation-format="numeric"/>
-    <category field="engineering"/>
-    <category field="generic-base"/>
-    <summary>IEEE style as per the 2018 guidelines, V 11.12.2018.</summary>
-    <updated>2019-12-20T09:14:19+00:00</updated>
-    <rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights>
-  </info>
-  <locale xml:lang="en">
-    <terms>
-      <term name="chapter" form="short">ch.</term>
-      <term name="presented at">presented at the</term>
-      <term name="available at">available</term>
-    </terms>
-  </locale>
-  <!-- Macros -->
-  <macro name="status">
-    <choose>
-      <if variable="page issue volume" match="none">
-        <text variable="status" text-case="capitalize-first" suffix="" font-weight="bold"/>
-      </if>
-    </choose>
-  </macro>
-  <macro name="edition">
-    <choose>
-      <if type="bill book chapter graphic legal_case legislation motion_picture paper-conference report song" match="any">
-        <choose>
-          <if is-numeric="edition">
-            <group delimiter=" ">
-              <number variable="edition" form="ordinal"/>
-              <text term="edition" form="short"/>
-            </group>
-          </if>
-          <else>
-            <text variable="edition" text-case="capitalize-first" suffix="."/>
-          </else>
-        </choose>
-      </if>
-    </choose>
-  </macro>
-  <macro name="issued">
-    <choose>
-      <if type="article-journal report" match="any">
-        <date variable="issued">
-          <date-part name="year" form="long" prefix="(" suffix=")" />
-        </date>
-      </if>
-      <else-if type="bill book chapter graphic legal_case legislation motion_picture song thesis" match="any">
-        <date variable="issued">
-          <date-part name="year" form="long"/>
-        </date>
-      </else-if>
-      <else-if type="paper-conference" match="any">
-        <date variable="issued">
-          <date-part name="month" form="short"/>
-          <date-part name="year" prefix=" "/>
-        </date>
-      </else-if>
-      <else>
-        <date variable="issued">
-          <date-part name="month" form="short" suffix=" "/>
-          <date-part name="day" form="numeric-leading-zeros" suffix=", "/>
-          <date-part name="year"/>
-        </date>
-      </else>
-    </choose>
-  </macro>
-  <macro name="author">
-    <names variable="author">
-      <name and="text" et-al-min="100" et-al-use-first="1" initialize-with=". "/>
-      <label form="short" prefix=", " text-case="capitalize-first"/>
-      <et-al font-style="italic"/>
-      <substitute>
-        <names variable="editor"/>
-        <names variable="translator"/>
-      </substitute>
-    </names>
-  </macro>
-  <macro name="editor">
-    <names variable="editor">
-      <name initialize-with=". " delimiter=", " and="text"/>
-      <label form="short" prefix=", " text-case="capitalize-first"/>
-    </names>
-  </macro>
-  <macro name="locators">
-    <group delimiter="">
-      <text macro="edition"/>
-      <group delimiter="">
-        <number variable="volume" form="numeric" font-weight="bold" />
-      </group>
-      <group delimiter=" ">
-        <number variable="number-of-volumes" form="numeric"/>
-        <text term="volume" form="short" plural="true"/>
-      </group>
-      <group delimiter=" ">
-        <number variable="issue" form="numeric" prefix="(" suffix=")" />
-      </group>
-    </group>
-  </macro>
-  <macro name="title">
-    <choose>
-      <if type="bill book graphic legal_case legislation motion_picture song" match="any">
-        <text variable="title" font-style="italic"/>
-      </if>
-      <else>
-        <text variable="title" quotes="false"/>
-      </else>
-    </choose>
-  </macro>
-  <macro name="publisher">
-    <choose>
-      <if type="bill book chapter graphic legal_case legislation motion_picture paper-conference song" match="any">
-        <group delimiter=": ">
-          <text variable="publisher-place"/>
-          <text variable="publisher"/>
-        </group>
-      </if>
-      <else>
-        <group delimiter=", ">
-          <text variable="publisher"/>
-          <text variable="publisher-place"/>
-        </group>
-      </else>
-    </choose>
-  </macro>
-  <macro name="event">
-    <choose>
-      <if type="paper-conference speech" match="any">
-        <choose>
-          <!-- Published Conference Paper -->
-          <if variable="collection-editor editor editorial-director issue page volume" match="any">
-            <group delimiter=", ">
-              <group delimiter=" ">
-                <text term="in"/>
-                <text variable="container-title" font-style="italic"/>
-              </group>
-              <text variable="event-place"/>
-            </group>
-          </if>
-          <!-- Unpublished Conference Paper -->
-          <else>
-            <group delimiter=", ">
-              <group delimiter=" ">
-                <text term="presented at"/>
-                <text variable="event"/>
-              </group>
-              <text variable="event-place"/>
-            </group>
-          </else>
-        </choose>
-      </if>
-    </choose>
-  </macro>
-  <macro name="access">
-    <choose>
-      <if type="webpage post post-weblog" match="any">
-        <choose>
-          <if variable="URL">
-            <group delimiter=" ">
-              <text variable="URL"/>
-              <group delimiter=" " prefix="(" suffix=")">
-                <text term="accessed"/>
-                <date variable="accessed">
-                  <date-part name="month" form="short" strip-periods="false"/>
-                  <date-part name="day" form="numeric-leading-zeros" prefix=" " suffix=", "/>
-                  <date-part name="year" form="long"/>
-                </date>
-              </group>
-            </group>
-          </if>
-        </choose>
-      </if>
-      <else-if match="any" variable="DOI">
-        <text variable="DOI" prefix="doi: "/>
-      </else-if>
-      <else>
-        <group delimiter=". ">
-          <group delimiter=": ">
-            <text term="accessed" text-case="capitalize-first"/>
-            <date variable="accessed">
-              <date-part name="month" form="short" suffix=" "/>
-              <date-part name="day" form="numeric-leading-zeros" suffix=", "/>
-              <date-part name="year"/>
-            </date>
-          </group>
-          <text term="online" prefix="[" suffix="]" text-case="capitalize-first"/>
-          <group delimiter=": ">
-            <text term="available at" text-case="capitalize-first"/>
-            <text variable="URL"/>
-          </group>
-        </group>
-      </else>
-    </choose>
-  </macro>
-  <macro name="page">
-    <choose>
-      <if type="article-journal" variable="number" match="all">
-        <group delimiter=" ">
-          <text value="Art."/>
-          <text term="issue" form="short"/>
-          <text variable="number"/>
-        </group>
-      </if>
-      <else>
-        <group delimiter=" ">
-          <text variable="page"/>
-        </group>
-      </else>
-    </choose>
-  </macro>
-  <macro name="citation-locator">
-    <group delimiter=" ">
-      <choose>
-        <if locator="page">
-          <label variable="locator" form="short"/>
-        </if>
-        <else>
-          <label variable="locator" form="short" text-case="capitalize-first"/>
-        </else>
-      </choose>
-      <text variable="locator"/>
-    </group>
-  </macro>
-  <!-- Citation -->
-  <citation collapse="citation-number">
-    <sort>
-      <key variable="citation-number"/>
-    </sort>
-    <layout delimiter=", ">
-      <group prefix="[" suffix="]" delimiter=", ">
-        <text variable="citation-number"/>
-        <text macro="citation-locator"/>
-      </group>
-    </layout>
-  </citation>
-  <!-- Bibliography -->
-  <bibliography entry-spacing="0" second-field-align="flush">
-    <layout suffix=".">
-      <!-- Citation Number -->
-      <text variable="citation-number" prefix="[" suffix="]"/>
-      <!-- Author(s) -->
-      <text macro="author" suffix=": "/>
-      <!-- Rest of Citation -->
-      <choose>
-        <!-- Specific Formats -->
-        <if type="article-journal">
-          <group delimiter="">
-            <text macro="title" suffix=". " />
-            <text variable="container-title" font-style="italic" form="short" suffix="."/>
-            <text macro="locators" suffix=", "/>
-            <text macro="page" suffix=" "/>
-            <text macro="issued"/>
-          </group>
-        </if>
-        <else-if type="paper-conference speech" match="any">
-          <group delimiter=", ">
-            <text macro="title"/>
-            <text macro="event"/>
-            <text macro="issued"/>
-            <text macro="locators"/>
-            <text macro="page"/>
-            <text macro="status"/>
-            <text macro="access"/>
-          </group>
-        </else-if>
-        <else-if type="report">
-           <group delimiter=", ">
-            <text macro="title"/>
-            <text macro="event"/>
-            <text macro="issued"/>
-            <text macro="locators"/>
-            <text macro="page"/>
-            <text macro="status"/>
-            <text macro="access"/>
-          </group>
-        </else-if>
-        <else-if type="thesis">
-          <group delimiter=", ">
-            <text macro="title"/>
-            <text macro="event"/>
-            <text macro="issued"/>
-            <text macro="locators"/>
-            <text macro="page"/>
-            <text macro="status"/>
-            <text macro="access"/>
-          </group>
-        </else-if>
-        <else-if type="webpage post-weblog post" match="any">
-          <group delimiter=", " suffix=". ">
-            <text macro="title"/>
-            <text variable="container-title" font-style="italic"/>
-            <text macro="issued"/>
-          </group>
-          <text macro="access"/>
-        </else-if>
-        <else-if type="patent">
-          <group delimiter=", ">
-            <text macro="title"/>
-            <text variable="number"/>
-            <text macro="issued"/>
-          </group>
-        </else-if>
-        <!-- Generic/Fallback Formats -->
-        <else-if type="bill book graphic legal_case legislation motion_picture report song" match="any">
-          <group delimiter=", " suffix=". ">
-            <text macro="title"/>
-            <text macro="locators"/>
-          </group>
-          <group delimiter=", ">
-            <text macro="publisher"/>
-            <text macro="issued"/>
-            <text macro="page"/>
-          </group>
-        </else-if>
-        <else-if type="article-magazine article-newspaper broadcast interview manuscript map patent personal_communication song speech thesis webpage" match="any">
-          <group delimiter=", ">
-            <text macro="title"/>
-            <text variable="container-title" font-style="italic"/>
-            <text macro="locators"/>
-            <text macro="publisher"/>
-            <text macro="page"/>
-            <text macro="issued"/>
-          </group>
-        </else-if>
-        <else-if type="chapter paper-conference" match="any">
-          <group delimiter=", " suffix=", ">
-            <text macro="title"/>
-            <group delimiter=" ">
-              <text term="in"/>
-              <text variable="container-title" font-style="italic"/>
-            </group>
-            <text macro="locators"/>
-          </group>
-          <text macro="editor" suffix=" "/>
-          <group delimiter=", ">
-            <text macro="publisher"/>
-            <text macro="issued"/>
-            <text macro="page"/>
-          </group>
-        </else-if>
-        <else>
-          <group delimiter=", " suffix=". ">
-            <text macro="title"/>
-            <text variable="container-title" font-style="italic"/>
-            <text macro="locators"/>
-          </group>
-          <group delimiter=", ">
-            <text macro="publisher"/>
-            <text macro="page"/>
-            <text macro="issued"/>
-            <text macro="access"/>
-          </group>
-        </else>
-      </choose>
-    </layout>
-  </bibliography>
-</style>

csl/acs_real.csl

@@ -1,18 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<style xmlns="http://purl.org/net/xbiblio/csl" version="1.0" default-locale="en-US">
-  <!-- Association for Computing Machinery (ACM), generated from "acm" metadata at https://github.com/citation-style-language/journals -->
-  <info>
-    <title>ACM Transactions on Modeling and Computer Simulation</title>
-    <title-short>TOMACS</title-short>
-    <id>http://www.zotero.org/styles/transactions-on-modeling-and-computer-simulation</id>
-    <link href="http://www.zotero.org/styles/transactions-on-modeling-and-computer-simulation" rel="self"/>
-    <link href="http://www.zotero.org/styles/association-for-computing-machinery" rel="independent-parent"/>
-    <link href="https://www.acm.org/publications/authors/reference-formatting" rel="documentation"/>
-    <category citation-format="numeric"/>
-    <category field="engineering"/>
-    <issn>1049-3301</issn>
-    <eissn>1558-1195</eissn>
-    <updated>2017-07-09T19:14:54+00:00</updated>
-    <rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights>
-  </info>
-</style>

csl/els.csl

@@ -1,149 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<style xmlns="http://purl.org/net/xbiblio/csl" class="in-text" version="1.0" demote-non-dropping-particle="sort-only" default-locale="en-US">
-  <info>
-    <title>Elsevier (numeric, with titles)</title>
-    <id>http://www.zotero.org/styles/elsevier-with-titles</id>
-    <link href="http://www.zotero.org/styles/elsevier-with-titles" rel="self"/>
-    <link href="http://www.zotero.org/styles/elsevier-without-titles" rel="template"/>
-    <link href="http://www.elsevier.com/journals/journal-of-hazardous-materials/0304-3894/guide-for-authors#68001" rel="documentation"/>
-    <author>
-      <name>Richard Karnesky</name>
-      <email>karnesky+zotero@gmail.com</email>
-      <uri>http://arc.nucapt.northwestern.edu/Richard_Karnesky</uri>
-    </author>
-    <contributor>
-      <name>Rintze Zelle</name>
-      <uri>http://twitter.com/rintzezelle</uri>
-    </contributor>
-    <category citation-format="numeric"/>
-    <category field="generic-base"/>
-    <summary>A style for many of Elsevier's journals that includes article titles in the reference list</summary>
-    <updated>2019-10-15T15:14:08+00:00</updated>
-    <rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights>
-  </info>
-  <macro name="author">
-    <names variable="author">
-      <name initialize-with="." delimiter=", " delimiter-precedes-last="always"/>
-      <label form="short" prefix=", "/>
-      <substitute>
-        <names variable="editor"/>
-        <names variable="translator"/>
-      </substitute>
-    </names>
-  </macro>
-  <macro name="editor">
-    <names variable="editor">
-      <name initialize-with="." delimiter=", " delimiter-precedes-last="always"/>
-      <label form="short" prefix=" (" text-case="capitalize-first" suffix=")"/>
-    </names>
-  </macro>
-  <macro name="year-date">
-    <choose>
-      <if variable="issued">
-        <date variable="issued">
-          <date-part name="year"/>
-        </date>
-      </if>
-      <else>
-        <text term="no date" form="short"/>
-      </else>
-    </choose>
-  </macro>
-  <macro name="publisher">
-    <text variable="publisher" suffix=", "/>
-    <text variable="publisher-place" suffix=", "/>
-    <text macro="year-date"/>
-  </macro>
-  <macro name="edition">
-    <!--TODO: CSL should have low numeric be text (e.g. '3'->'third')-->
-    <choose>
-      <if is-numeric="edition">
-        <group delimiter=" ">
-          <number variable="edition" form="ordinal"/>
-          <text term="edition" form="short"/>
-        </group>
-      </if>
-      <else>
-        <text variable="edition"/>
-      </else>
-    </choose>
-  </macro>
-  <macro name="access">
-    <choose>
-      <if variable="URL">
-        <text variable="URL"/>
-        <group prefix=" (" suffix=")" delimiter=" ">
-          <text term="accessed"/>
-          <date variable="accessed" form="text"/>
-        </group>
-      </if>
-    </choose>
-  </macro>
-  <citation collapse="citation-number">
-    <sort>
-      <key variable="citation-number"/>
-    </sort>
-    <layout prefix="[" suffix="]" delimiter=",">
-      <text variable="citation-number"/>
-    </layout>
-  </citation>
-  <bibliography entry-spacing="0" second-field-align="flush">
-    <layout suffix=".">
-      <text variable="citation-number" prefix="[" suffix="]"/>
-      <text macro="author" suffix=", "/>
-      <choose>
-        <if type="bill book graphic legal_case legislation motion_picture report song" match="any">
-          <group delimiter=", ">
-            <text variable="title"/>
-            <text macro="edition"/>
-            <text macro="publisher"/>
-          </group>
-        </if>
-        <else-if type="chapter paper-conference" match="any">
-          <text variable="title" suffix=", "/>
-          <text term="in" suffix=": "/>
-          <text macro="editor" suffix=", "/>
-          <text variable="container-title" form="short" text-case="title" suffix=", "/>
-          <text macro="edition" suffix=", "/>
-          <text macro="publisher"/>
-          <group delimiter=" ">
-            <label variable="page" form="short" prefix=": "/>
-            <text variable="page"/>
-          </group>
-        </else-if>
-        <else-if type="patent">
-          <group delimiter=", ">
-            <text variable="title"/>
-            <text variable="number"/>
-            <text macro="year-date"/>
-          </group>
-        </else-if>
-        <else-if type="thesis">
-          <group delimiter=", ">
-            <text variable="title"/>
-            <text variable="genre"/>
-            <text variable="publisher"/>
-            <text macro="year-date"/>
-          </group>
-        </else-if>
-        <else>
-          <group delimiter=" ">
-            <text variable="title" suffix=","/>
-            <text variable="container-title" form="short" text-case="title" suffix="."/>
-            <text variable="volume"/>
-            <text macro="year-date" prefix="(" suffix=")"/>
-            <text variable="page" form="short"/>
-          </group>
-        </else>
-      </choose>
-      <choose>
-        <if variable="DOI">
-          <text variable="DOI" prefix=". https://doi.org/"/>
-        </if>
-        <else>
-          <text macro="access" prefix=". "/>
-        </else>
-      </choose>
-    </layout>
-  </bibliography>
-</style>

csl/ieee.csl

@@ -1,400 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<style xmlns="http://purl.org/net/xbiblio/csl" class="in-text" version="1.0" demote-non-dropping-particle="sort-only">
-  <info>
-    <title>IEEE</title>
-    <id>http://www.zotero.org/styles/ieee</id>
-    <link href="http://www.zotero.org/styles/ieee" rel="self"/>
-    <link href="https://ieeeauthorcenter.ieee.org/wp-content/uploads/IEEE-Reference-Guide.pdf" rel="documentation"/>
-    <link href="https://journals.ieeeauthorcenter.ieee.org/your-role-in-article-production/ieee-editorial-style-manual/" rel="documentation"/>
-    <author>
-      <name>Michael Berkowitz</name>
-      <email>mberkowi@gmu.edu</email>
-    </author>
-    <contributor>
-      <name>Julian Onions</name>
-      <email>julian.onions@gmail.com</email>
-    </contributor>
-    <contributor>
-      <name>Rintze Zelle</name>
-      <uri>http://twitter.com/rintzezelle</uri>
-    </contributor>
-    <contributor>
-      <name>Stephen Frank</name>
-      <uri>http://www.zotero.org/sfrank</uri>
-    </contributor>
-    <contributor>
-      <name>Sebastian Karcher</name>
-    </contributor>
-    <contributor>
-      <name>Giuseppe Silano</name>
-      <email>g.silano89@gmail.com</email>
-      <uri>http://giuseppesilano.net</uri>
-    </contributor>
-    <contributor>
-      <name>Patrick O'Brien</name>
-    </contributor>
-    <contributor>
-      <name>Brenton M. Wiernik</name>
-    </contributor>
-    <category citation-format="numeric"/>
-    <category field="engineering"/>
-    <category field="generic-base"/>
-    <summary>IEEE style as per the 2018 guidelines, V 11.12.2018.</summary>
-    <updated>2019-12-20T09:14:19+00:00</updated>
-    <rights license="http://creativecommons.org/licenses/by-sa/3.0/">This work is licensed under a Creative Commons Attribution-ShareAlike 3.0 License</rights>
-  </info>
-  <locale xml:lang="en">
-    <terms>
-      <term name="chapter" form="short">ch.</term>
-      <term name="presented at">presented at the</term>
-      <term name="available at">available</term>
-    </terms>
-  </locale>
-  <!-- Macros -->
-  <macro name="status">
-    <choose>
-      <if variable="page issue volume" match="none">
-        <text variable="status" text-case="capitalize-first" suffix="" font-weight="bold"/>
-      </if>
-    </choose>
-  </macro>
-  <macro name="edition">
-    <choose>
-      <if type="bill book chapter graphic legal_case legislation motion_picture paper-conference report song" match="any">
-        <choose>
-          <if is-numeric="edition">
-            <group delimiter=" ">
-              <number variable="edition" form="ordinal"/>
-              <text term="edition" form="short"/>
-            </group>
-          </if>
-          <else>
-            <text variable="edition" text-case="capitalize-first" suffix="."/>
-          </else>
-        </choose>
-      </if>
-    </choose>
-  </macro>
-  <macro name="issued">
-    <choose>
-      <if type="article-journal report" match="any">
-        <date variable="issued">
-          <date-part name="month" form="short" suffix=" "/>
-          <date-part name="year" form="long"/>
-        </date>
-      </if>
-      <else-if type="bill book chapter graphic legal_case legislation motion_picture song thesis" match="any">
-        <date variable="issued">
-          <date-part name="year" form="long"/>
-        </date>
-      </else-if>
-      <else-if type="paper-conference" match="any">
-        <date variable="issued">
-          <date-part name="month" form="short"/>
-          <date-part name="year" prefix=" "/>
-        </date>
-      </else-if>
-      <else>
-        <date variable="issued">
-          <date-part name="month" form="short" suffix=" "/>
-          <date-part name="day" form="numeric-leading-zeros" suffix=", "/>
-          <date-part name="year"/>
-        </date>
-      </else>
-    </choose>
-  </macro>
-  <macro name="author">
-    <names variable="author">
-      <name and="text" et-al-min="7" et-al-use-first="1" initialize-with=". "/>
-      <label form="short" prefix=", " text-case="capitalize-first"/>
-      <et-al font-style="italic"/>
-      <substitute>
-        <names variable="editor"/>
-        <names variable="translator"/>
-      </substitute>
-    </names>
-  </macro>
-  <macro name="editor">
-    <names variable="editor">
-      <name initialize-with=". " delimiter=", " and="text"/>
-      <label form="short" prefix=", " text-case="capitalize-first"/>
-    </names>
-  </macro>
-  <macro name="locators">
-    <group delimiter=", ">
-      <text macro="edition"/>
-      <group delimiter=" ">
-        <text term="volume" form="short"/>
-        <number variable="volume" form="numeric"/>
-      </group>
-      <group delimiter=" ">
-        <number variable="number-of-volumes" form="numeric"/>
-        <text term="volume" form="short" plural="true"/>
-      </group>
-      <group delimiter=" ">
-        <text term="issue" form="short"/>
-        <number variable="issue" form="numeric"/>
-      </group>
-    </group>
-  </macro>
-  <macro name="title">
-    <choose>
-      <if type="bill book graphic legal_case legislation motion_picture song" match="any">
-        <text variable="title" font-style="italic"/>
-      </if>
-      <else>
-        <text variable="title" quotes="true"/>
-      </else>
-    </choose>
-  </macro>
-  <macro name="publisher">
-    <choose>
-      <if type="bill book chapter graphic legal_case legislation motion_picture paper-conference song" match="any">
-        <group delimiter=": ">
-          <text variable="publisher-place"/>
-          <text variable="publisher"/>
-        </group>
-      </if>
-      <else>
-        <group delimiter=", ">
-          <text variable="publisher"/>
-          <text variable="publisher-place"/>
-        </group>
-      </else>
-    </choose>
-  </macro>
-  <macro name="event">
-    <choose>
-      <if type="paper-conference speech" match="any">
-        <choose>
-          <!-- Published Conference Paper -->
-          <if variable="collection-editor editor editorial-director issue page volume" match="any">
-            <group delimiter=", ">
-              <group delimiter=" ">
-                <text term="in"/>
-                <text variable="container-title" font-style="italic"/>
-              </group>
-              <text variable="event-place"/>
-            </group>
-          </if>
-          <!-- Unpublished Conference Paper -->
-          <else>
-            <group delimiter=", ">
-              <group delimiter=" ">
-                <text term="presented at"/>
-                <text variable="event"/>
-              </group>
-              <text variable="event-place"/>
-            </group>
-          </else>
-        </choose>
-      </if>
-    </choose>
-  </macro>
-  <macro name="access">
-    <choose>
-      <if type="webpage post post-weblog" match="any">
-        <choose>
-          <if variable="URL">
-            <group delimiter=" ">
-              <text variable="URL"/>
-              <group delimiter=" " prefix="(" suffix=")">
-                <text term="accessed"/>
-                <date variable="accessed">
-                  <date-part name="month" form="short" strip-periods="false"/>
-                  <date-part name="day" form="numeric-leading-zeros" prefix=" " suffix=", "/>
-                  <date-part name="year" form="long"/>
-                </date>
-              </group>
-            </group>
-          </if>
-        </choose>
-      </if>
-      <else-if match="any" variable="DOI">
-        <text variable="DOI" prefix="doi: "/>
-      </else-if>
-      <else>
-        <group delimiter=". ">
-          <group delimiter=": ">
-            <text term="accessed" text-case="capitalize-first"/>
-            <date variable="accessed">
-              <date-part name="month" form="short" suffix=" "/>
-              <date-part name="day" form="numeric-leading-zeros" suffix=", "/>
-              <date-part name="year"/>
-            </date>
-          </group>
-          <text term="online" prefix="[" suffix="]" text-case="capitalize-first"/>
-          <group delimiter=": ">
-            <text term="available at" text-case="capitalize-first"/>
-            <text variable="URL"/>
-          </group>
-        </group>
-      </else>
-    </choose>
-  </macro>
-  <macro name="page">
-    <choose>
-      <if type="article-journal" variable="number" match="all">
-        <group delimiter=" ">
-          <text value="Art."/>
-          <text term="issue" form="short"/>
-          <text variable="number"/>
-        </group>
-      </if>
-      <else>
-        <group delimiter=" ">
-          <label variable="page" form="short"/>
-          <text variable="page"/>
-        </group>
-      </else>
-    </choose>
-  </macro>
-  <macro name="citation-locator">
-    <group delimiter=" ">
-      <choose>
-        <if locator="page">
-          <label variable="locator" form="short"/>
-        </if>
-        <else>
-          <label variable="locator" form="short" text-case="capitalize-first"/>
-        </else>
-      </choose>
-      <text variable="locator"/>
-    </group>
-  </macro>
-  <!-- Citation -->
-  <citation collapse="citation-number">
-    <sort>
-      <key variable="citation-number"/>
-    </sort>
-    <layout delimiter=", ">
-      <group prefix="[" suffix="]" delimiter=", ">
-        <text variable="citation-number"/>
-        <text macro="citation-locator"/>
-      </group>
-    </layout>
-  </citation>
-  <!-- Bibliography -->
-  <bibliography entry-spacing="0" second-field-align="flush">
-    <layout suffix=".">
-      <!-- Citation Number -->
-      <text variable="citation-number" prefix="[" suffix="]"/>
-      <!-- Author(s) -->
-      <text macro="author" suffix=", "/>
-      <!-- Rest of Citation -->
-      <choose>
-        <!-- Specific Formats -->
-        <if type="article-journal">
-          <group delimiter=", ">
-            <text macro="title"/>
-            <text variable="container-title" font-style="italic" form="short"/>
-            <text macro="locators"/>
-            <text macro="page"/>
-            <text macro="issued"/>
-            <text macro="status"/>
-            <text macro="access"/>
-          </group>
-        </if>
-        <else-if type="paper-conference speech" match="any">
-          <group delimiter=", ">
-            <text macro="title"/>
-            <text macro="event"/>
-            <text macro="issued"/>
-            <text macro="locators"/>
-            <text macro="page"/>
-            <text macro="status"/>
-            <text macro="access"/>
-          </group>
-        </else-if>
-        <else-if type="report">
-          <group delimiter=". ">
-            <group delimiter=", ">
-              <text macro="title"/>
-              <text macro="publisher"/>
-              <group delimiter=" ">
-                <text variable="genre"/>
-                <text variable="number"/>
-              </group>
-              <text macro="issued"/>
-            </group>
-            <text macro="access"/>
-          </group>
-        </else-if>
-        <else-if type="thesis">
-          <group delimiter=", ">
-            <text macro="title"/>
-            <text variable="genre"/>
-            <text macro="publisher"/>
-            <text macro="issued"/>
-          </group>
-        </else-if>
-        <else-if type="webpage post-weblog post" match="any">
-          <group delimiter=", " suffix=". ">
-            <text macro="title"/>
-            <text variable="container-title" font-style="italic"/>
-            <text macro="issued"/>
-          </group>
-          <text macro="access"/>
-        </else-if>
-        <else-if type="patent">
-          <group delimiter=", ">
-            <text macro="title"/>
-            <text variable="number"/>
-            <text macro="issued"/>
-          </group>
-        </else-if>
-        <!-- Generic/Fallback Formats -->
-        <else-if type="bill book graphic legal_case legislation motion_picture report song" match="any">
-          <group delimiter=", " suffix=". ">
-            <text macro="title"/>
-            <text macro="locators"/>
-          </group>
-          <group delimiter=", ">
-            <text macro="publisher"/>
-            <text macro="issued"/>
-            <text macro="page"/>
-          </group>
-        </else-if>
-        <else-if type="article-magazine article-newspaper broadcast interview manuscript map patent personal_communication song speech thesis webpage" match="any">
-          <group delimiter=", ">
-            <text macro="title"/>
-            <text variable="container-title" font-style="italic"/>
-            <text macro="locators"/>
-            <text macro="publisher"/>
-            <text macro="page"/>
-            <text macro="issued"/>
-          </group>
-        </else-if>
-        <else-if type="chapter paper-conference" match="any">
-          <group delimiter=", " suffix=", ">
-            <text macro="title"/>
-            <group delimiter=" ">
-              <text term="in"/>
-              <text variable="container-title" font-style="italic"/>
-            </group>
-            <text macro="locators"/>
-          </group>
-          <text macro="editor" suffix=" "/>
-          <group delimiter=", ">
-            <text macro="publisher"/>
-            <text macro="issued"/>
-            <text macro="page"/>
-          </group>
-        </else-if>
-        <else>
-          <group delimiter=", " suffix=". ">
-            <text macro="title"/>
-            <text variable="container-title" font-style="italic"/>
-            <text macro="locators"/>
-          </group>
-          <group delimiter=", ">
-            <text macro="publisher"/>
-            <text macro="page"/>
-            <text macro="issued"/>
-            <text macro="access"/>
-          </group>
-        </else>
-      </choose>
-    </layout>
-  </bibliography>
-</style>

notes.md

@@ -1,30 +0,0 @@
----
-title: "<++>"
-
-
-###
-### Bibliography settings
-###
-bibliography:
-    - /home/aselimov/typesetting/references.bib
-csl: /home/aselimov/typesetting/ieee.csl
-link-citations: true
-
-
-###
-### Formatting settings
-###
-documentclass: article
-fontsize: 12pt
-#geometry: margin=1.0in
-geometry: "left=3cm,right=3cm,top=2cm,bottom=2cm"
-header-includes:
-    - \usepackage{times}
-    - \usepackage{amsmath}
-urlcolor: blue
-output: 
-    rmarkdown::pdf_document:
----
-
-<++>
-

pandoc_lua_filters/author-info-blocks.lua

@@ -1,176 +0,0 @@
---[[
-affiliation-blocks – generate title components
-
-Copyright © 2017–2020 Albert Krewinkel
-
-Permission to use, copy, modify, and/or distribute this software for any purpose
-with or without fee is hereby granted, provided that the above copyright notice
-and this permission notice appear in all copies.
-
-THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES WITH
-REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND
-FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY SPECIAL, DIRECT,
-INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
-OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER
-TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF
-THIS SOFTWARE.
-]]
-local List = require 'pandoc.List'
-local utils = require 'pandoc.utils'
-local stringify = utils.stringify
-
-local default_marks
-local default_marks = {
-  corresponding_author = FORMAT == 'latex'
-    and {pandoc.RawInline('latex', '*')}
-    or {pandoc.Str '✉'},
-  equal_contributor = FORMAT == 'latex'
-    and {pandoc.RawInline('latex', '$\\dagger{}$')}
-    or {pandoc.Str '*'},
-}
-
-local function intercalate(lists, elem)
-  local result = List:new{}
-  for i = 1, (#lists - 1) do
-    result:extend(lists[i])
-    result:extend(elem)
-  end
-  if #lists > 0 then
-    result:extend(lists[#lists])
-  end
-  return result
-end
-
---- Check whether the given author is a corresponding author
-local function is_corresponding_author(author)
-  return author.correspondence and author.email
-end
-
---- Create inlines for a single author (includes all author notes)
-local function author_inline_generator (get_mark)
-  return function (author)
-    local author_marks = List:new{}
-    if author.equal_contributor then
-      author_marks[#author_marks + 1] = get_mark 'equal_contributor'
-    end
-    local idx_str
-    for _, idx in ipairs(author.institute) do
-      if type(idx) ~= 'table' then
-        idx_str = tostring(idx)
-      else
-        idx_str = stringify(idx)
-      end
-      author_marks[#author_marks + 1] = {pandoc.Str(idx_str)}
-    end
-    if is_corresponding_author(author) then
-      author_marks[#author_marks + 1] = get_mark 'corresponding_author'
-    end
-    local res = List.clone(author.name)
-    res[#res + 1] = pandoc.Superscript(intercalate(author_marks, {pandoc.Str ','}))
-    return res
-  end
-end
-
-local function is_equal_contributor (author)
-  return author.equal_contributor
-end
-
---- Create equal contributors note.
-local function create_equal_contributors_block(authors, mark)
-  local has_equal_contribs = List:new(authors):find_if(is_equal_contributor)
-  if not has_equal_contribs then
-    return nil
-  end
-  local contributors = {
-    pandoc.Superscript(mark'equal_contributor'),
-    pandoc.Space(),
-    pandoc.Str 'These authors contributed equally to this work.'
-  }
-  return List:new{pandoc.Para(contributors)}
-end
-
---- Generate a block list all affiliations, marked with arabic numbers.
-local function create_affiliations_blocks(affiliations)
-  local affil_lines = List:new(affiliations):map(
-    function (affil, i)
-      local num_inlines = List:new{
-        pandoc.Superscript{pandoc.Str(tostring(i))},
-        pandoc.Space()
-      }
-      return num_inlines .. affil.name
-    end
-                                                )
-  return {pandoc.Para(intercalate(affil_lines, {pandoc.LineBreak()}))}
-end
-
---- Generate a block element containing the correspondence information
-local function create_correspondence_blocks(authors, mark)
-  local corresponding_authors = List:new{}
-  for _, author in ipairs(authors) do
-    if is_corresponding_author(author) then
-      local mailto = 'mailto:' .. pandoc.utils.stringify(author.email)
-      local author_with_mail = List:new(
-        author.name .. List:new{pandoc.Space(),  pandoc.Str '<'} ..
-        author.email .. List:new{pandoc.Str '>'}
-      )
-      local link = pandoc.Link(author_with_mail, mailto)
-      table.insert(corresponding_authors, {link})
-    end
-  end
-  if #corresponding_authors == 0 then
-    return nil
-  end
-  local correspondence = List:new{
-    pandoc.Superscript(mark'corresponding_author'),
-    pandoc.Space(),
-    pandoc.Str'Correspondence:',
-    pandoc.Space()
-  }
-  local sep = List:new{pandoc.Str',',  pandoc.Space()}
-  return {
-    pandoc.Para(correspondence .. intercalate(corresponding_authors, sep))
-  }
-end
-
---- Generate a list of inlines containing all authors.
-local function create_authors_inlines(authors, mark)
-  local inlines_generator = author_inline_generator(mark)
-  local inlines = List:new(authors):map(inlines_generator)
-  local and_str = List:new{pandoc.Space(), pandoc.Str'and', pandoc.Space()}
-
-  local last_author = inlines[#inlines]
-  inlines[#inlines] = nil
-  local result = intercalate(inlines, {pandoc.Str ',', pandoc.Space()})
-  if #authors > 1 then
-    result:extend(List:new{pandoc.Str ","} .. and_str)
-  end
-  result:extend(last_author)
-  return result
-end
-
-return {
-  {
-    Pandoc = function (doc)
-      local meta = doc.meta
-      local body = List:new{}
-
-      local mark = function (mark_name) return default_marks[mark_name] end
-
-      body:extend(create_equal_contributors_block(doc.meta.author, mark) or {})
-      body:extend(create_affiliations_blocks(doc.meta.institute) or {})
-      body:extend(create_correspondence_blocks(doc.meta.author, mark) or {})
-      body:extend(doc.blocks)
-
-      -- Overwrite authors with formatted values. We use a single, formatted
-      -- string for most formats. LaTeX output, however, looks nicer if we
-      -- provide a authors as a list.
-      meta.author = FORMAT:match 'latex'
-        and pandoc.MetaList(doc.meta.author):map(author_inline_generator(mark))
-        or pandoc.MetaInlines(create_authors_inlines(doc.meta.author, mark))
-      -- Institute info is now baked into the affiliations block.
-      meta.institute = nil
-
-      return pandoc.Pandoc(body, meta)
-    end
-  }
-}

pandoc_lua_filters/pagebreak.lua

@@ -1,109 +0,0 @@
---[[
-pagebreak – convert raw LaTeX page breaks to other formats
-
-Copyright © 2017-2020 Benct Philip Jonsson, Albert Krewinkel
-
-Permission to use, copy, modify, and/or distribute this software for any
-purpose with or without fee is hereby granted, provided that the above
-copyright notice and this permission notice appear in all copies.
-
-THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES
-WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF
-MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR
-ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES
-WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN
-ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF
-OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.
-]]
-local stringify_orig = (require 'pandoc.utils').stringify
-
-local function stringify(x)
-  return type(x) == 'string' and x or stringify_orig(x)
-end
-
---- configs – these are populated in the Meta filter.
-local pagebreak = {
-  asciidoc = '<<<\n\n',
-  context = '\\page',
-  epub = '<p style="page-break-after: always;"> </p>',
-  html = '<div style="page-break-after: always;"></div>',
-  latex = '\\newpage{}',
-  ms = '.bp',
-  ooxml = '<w:p><w:r><w:br w:type="page"/></w:r></w:p>',
-  odt = '<text:p text:style-name="Pagebreak"/>'
-}
-
-local function pagebreaks_from_config (meta)
-  local html_class =
-    (meta.newpage_html_class and stringify(meta.newpage_html_class))
-    or os.getenv 'PANDOC_NEWPAGE_HTML_CLASS'
-  if html_class and html_class ~= '' then
-    pagebreak.html = string.format('<div class="%s"></div>', html_class)
-  end
-
-  local odt_style =
-    (meta.newpage_odt_style and stringify(meta.newpage_odt_style))
-    or os.getenv 'PANDOC_NEWPAGE_ODT_STYLE'
-  if odt_style and odt_style ~= '' then
-    pagebreak.odt = string.format('<text:p text:style-name="%s"/>', odt_style)
-  end
-end
-
---- Return a block element causing a page break in the given format.
-local function newpage(format)
-  if format:match 'asciidoc' then
-    return pandoc.RawBlock('asciidoc', pagebreak.asciidoc)
-  elseif format == 'context' then
-    return pandoc.RawBlock('context', pagebreak.context)
-  elseif format == 'docx' then
-    return pandoc.RawBlock('openxml', pagebreak.ooxml)
-  elseif format:match 'epub' then
-    return pandoc.RawBlock('html', pagebreak.epub)
-  elseif format:match 'html.*' then
-    return pandoc.RawBlock('html', pagebreak.html)
-  elseif format:match 'latex' then
-    return pandoc.RawBlock('tex', pagebreak.latex)
-  elseif format:match 'ms' then
-    return pandoc.RawBlock('ms', pagebreak.ms)
-  elseif format:match 'odt' then
-    return pandoc.RawBlock('opendocument', pagebreak.odt)
-  else
-    -- fall back to insert a form feed character
-    return pandoc.Para{pandoc.Str '\f'}
-  end
-end
-
-local function is_newpage_command(command)
-  return command:match '^\\newpage%{?%}?$'
-    or command:match '^\\pagebreak%{?%}?$'
-end
-
--- Filter function called on each RawBlock element.
-function RawBlock (el)
-  -- Don't do anything if the output is TeX
-  if FORMAT:match 'tex$' then
-    return nil
-  end
-  -- check that the block is TeX or LaTeX and contains only
-  -- \newpage or \pagebreak.
-  if el.format:match 'tex' and is_newpage_command(el.text) then
-    -- use format-specific pagebreak marker. FORMAT is set by pandoc to
-    -- the targeted output format.
-    return newpage(FORMAT)
-  end
-  -- otherwise, leave the block unchanged
-  return nil
-end
-
--- Turning paragraphs which contain nothing but a form feed
--- characters into line breaks.
-function Para (el)
-  if #el.content == 1 and el.content[1].text == '\f' then
-    return newpage(FORMAT)
-  end
-end
-
-return {
-  {Meta = pagebreaks_from_config},
-  {RawBlock = RawBlock, Para = Para}
-}

pandoc_lua_filters/scholarly-metadata.lua

@@ -1,185 +0,0 @@
---[[
-ScholarlyMeta – normalize author/affiliation meta variables
-
-Copyright (c) 2017-2020 Albert Krewinkel, Robert Winkler
-
-Permission to use, copy, modify, and/or distribute this software for any purpose
-with or without fee is hereby granted, provided that the above copyright notice
-and this permission notice appear in all copies.
-
-THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES WITH
-REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND
-FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY SPECIAL, DIRECT,
-INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
-OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER
-TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF
-THIS SOFTWARE.
-]]
-local List = require 'pandoc.List'
-
--- Split a string at commas.
-local function comma_separated_values(str)
-  local acc = List:new{}
-  for substr in str:gmatch('([^,]*)') do
-    acc[#acc + 1] = substr:gsub('^%s*', ''):gsub('%s*$', '') -- trim
-  end
-  return acc
-end
-
---- Ensure the return value is a list.
-local function ensure_list (val)
-  if type(val) ~= 'table' then
-    -- create singleton list (or empty list if val == nil).
-    return List:new{val}
-  elseif val.t == 'MetaInlines' then
-    -- check if this is really a comma-separated list
-    local csv = comma_separated_values(pandoc.utils.stringify(val))
-    if #csv >= 2 then
-      return csv
-    end
-    return List:new{val}
-  elseif val.t == 'MetaList' then
-    return List:new(val)
-  else
-    -- MetaBlocks or MetaMap, use as a singleton
-    return List:new{val}
-  end
-end
-
---- Returns a function which checks whether an object has the given ID.
-local function has_id (id)
-  return function(x) return x.id == id end
-end
-
---- Copy all key-value pairs of the first table into the second iff there is no
--- such key yet in the second table.
--- @returns the second argument
-function add_missing_entries(a, b)
-  for k, v in pairs(a) do
-    b[k] = b[k] or v
-  end
-  return b
-end
-
---- Create an object with a name. The name is either taken directly from the
--- `name` field, or from the *only* field name (i.e., key) if the object is a
--- dictionary with just one entry. If neither exists, the name is left unset
--- (`nil`).
-function to_named_object (obj)
-  local named = {}
-  if type(obj) ~= 'table' then
-    -- if the object isn't a table, just use its value as a name.
-    named.name = pandoc.MetaInlines{pandoc.Str(tostring(obj))}
-    named.id = tostring(obj)
-  elseif obj.t == 'MetaInlines' then
-      -- Treat inlines as the name
-      named.name = obj
-      named.id = pandoc.utils.stringify(obj)
-  elseif obj.name ~= nil then
-    -- object has name attribute → just create a copy of the object
-    add_missing_entries(obj, named)
-    named.id = pandoc.utils.stringify(named.id or named.name)
-  elseif next(obj) and next(obj, next(obj)) == nil then
-    -- the entry's key is taken as the name, the value contains the
-    -- attributes.
-    key, attribs = next(obj)
-    if type(attribs) == "string" or attribs.t == 'MetaInlines' then
-      named.name = attribs
-    else
-      add_missing_entries(attribs, named)
-      named.name = named.name or pandoc.MetaInlines{pandoc.Str(tostring(key))}
-    end
-    named.id = named.id and pandoc.utils.stringify(named.id) or key
-  else
-    -- this is not a named object adhering to the usual conventions.
-    error('not a named object: ' .. tostring(obj))
-  end
-  return named
-end
-
---- Resolve institute placeholders to full named objects
-local function resolve_institutes (institute, known_institutes)
-  local unresolved_institutes
-  if institute == nil then
-    unresolved_institutes = {}
-  elseif type(institute) == "string" or type(institute) == "number" then
-    unresolved_institutes = {institute}
-  else
-    unresolved_institutes = institute
-  end
-
-  local result = List:new{}
-  for i, inst in ipairs(unresolved_institutes) do
-    result[i] =
-      known_institutes[tonumber(inst)] or
-      known_institutes:find_if(has_id(pandoc.utils.stringify(inst))) or
-      to_named_object(inst)
-  end
-  return result
-end
-
---- Insert a named object into a list; if an object of the same name exists
--- already, add all properties only present in the new object to the existing
--- item.
-function merge_on_id (list, namedObj)
-  local elem, idx = list:find_if(has_id(namedObj.id))
-  local res = elem and add_missing_entries(namedObj, elem) or namedObj
-  local obj_idx = idx or (#list + 1)
-  -- return res, obj_idx
-  list[obj_idx] = res
-  return res, #list
-end
-
---- Flatten a list of lists.
-local function flatten (lists)
-  local result = List:new{}
-  for _, lst in ipairs(lists) do
-    result:extend(lst)
-  end
-  return result
-end
-
---- Canonicalize authors and institutes
-local function canonicalize(raw_author, raw_institute)
-  local institutes = ensure_list(raw_institute):map(to_named_object)
-  local authors = ensure_list(raw_author):map(to_named_object)
-
-  for _, author in ipairs(authors) do
-    author.institute = resolve_institutes(
-      ensure_list(author.institute),
-      institutes
-    )
-  end
-
-  -- Merge institutes defined in author objects with those defined in the
-  -- top-level list.
-  local author_insts = flatten(authors:map(function(x) return x.institute end))
-  for _, inst in ipairs(author_insts) do
-    merge_on_id(institutes, inst)
-  end
-
-  -- Add list indices to institutes for numbering and reference purposes
-  for idx, inst in ipairs(institutes) do
-    inst.index = pandoc.MetaInlines{pandoc.Str(tostring(idx))}
-  end
-
-  -- replace institutes with their indices
-  local to_index = function (inst)
-    return tostring(select(2, institutes:find_if(has_id(inst.id))))
-  end
-  for _, author in ipairs(authors) do
-    author.institute = pandoc.MetaList(author.institute:map(to_index))
-  end
-
-  return authors, institutes
-end
-
-
-return {
-  {
-    Meta = function(meta)
-      meta.author, meta.institute = canonicalize(meta.author, meta.institute)
-      return meta
-    end
-  }
-}

pres.md

@@ -1,16 +0,0 @@
----
-title: "<++>"
-abstract: ""
-author: Alex Selimov
-
-
-###
-### Bibliography settings
-###
-bibliography:
-    - /home/aselimov/typesetting/references.bib
-csl: /home/aselimov/typesetting/ieee.csl
-link-citations: true
-
----
-

presentation.tex

@@ -1,81 +0,0 @@
-\documentclass[12pt]{beamer}
-
-\usetheme{auriga}
-\usecolortheme{auriga}
-
-\usepackage{enumitem}
-\setitemize{itemsep=0.1em}
-\setlist[itemize,1]{label=$\bullet$}
-\usepackage{fontspec}
-\setmonofont{Source Code Pro}
-\usepackage{appendixnumberbeamer}
-\setbeamerfont{caption}{size=\footnotesize}
-
-%New bullet points
-%\setbeamertemplate{itemize item}[circle]
-
-\usepackage[url=false,doi=false,isbn=false]{biblatex}
-\usepackage{booktabs}
-\usepackage[scale=2]{ccicons}
-\usepackage{subcaption}
-\usepackage{pgfplots}
-\usepackage{xspace}
-\usepackage{siunitx} % Required for alignment
-\sisetup{
-  round-mode          = places, % Rounds numbers
-  round-precision     = 2, % to 2 places
-}
-\usepackage{booktabs}
-\usepgfplotslibrary{dateplot}
-\pgfplotsset{compat=1.16}
-
-\bibliography{/home/aselimov/typesetting/references}
-\setbeamertemplate{bibliography item}{\insertbiblabel}
-\setbeamerfont{footnote}{size=\tiny}
-\definecolor{red}{RGB}{181, 23, 0}
-\definecolor{blue}{RGB}{0, 118, 186}
-\definecolor{gray}{RGB}{146, 146, 146}
-
-\usepackage[labelformat=empty]{caption}
-
-\DeclareCiteCommand{\footpartcite}[\mkbibfootnote]
- {\usebibmacro{prenote}}
-{ \setunit{\addnbspace}
- \printnames{labelname}%
-%\setunit{\labelnamepunct}
-% \printfield[citetitle]{title}%
- \newunit
- \printfield{year}}
-{\addsemicolon\space}
-{\usebibmacro{postnote}}
-
-\DeclareCiteCommand{\partcite}
- {\usebibmacro{prenote}}
-{ \setunit{\addnbspace}
- \printnames{labelname}%
-%\setunit{\labelnamepunct}
-% \printfield[citetitle]{title}%
- \newunit
- \printfield{year}}
-{\addsemicolon\space}
-{\usebibmacro{postnote}}
-\DeclareMultiCiteCommand{\partcites}{\partcite}{\addsemicolon\space}
-
-
-
-\title{<++>}
-\date{\today}
-\author{Alex Selimov}
-\institute{Georgia Institute of Technology}
-\titlegraphic{\hfill\includegraphics[height=1cm]{GTLogo.pdf}}
-
-\begin{document}
-
-\maketitle
-
-\begin{frame}{Overview}
-  \setbeamertemplate{section in toc}[sections numbered]
-  \tableofcontents%[hideallsubsections]
-\end{frame}
-
-\end{document}

presentation_metropolis.tex

@@ -1,59 +0,0 @@
-\documentclass[11pt]{beamer}
-
-\usetheme[progressbar=foot]{metropolis}
-
-%\usepackage{fontspec}
-%\setmainfont{Source Serif Pro}
-%\setsansfont{Source Sans Pro}
-\setmonofont{Source Code Pro}
-%Define the Colors
-\definecolor{main}{HTML}{192E5B}
-\definecolor{alert}{HTML}{0AAFF1}
-\definecolor{deepgreen}{rgb}{0,0.5,0}
-\definecolor{deepblue}{rgb}{0,0,0.5}
-\usepackage{appendixnumberbeamer}
-\setbeamercolor{background canvas}{bg=white}
-\setbeamercolor{normal text}{bg=white, fg=main}
-\setbeamercolor{alerted text}{bg=white, fg=alert}
-\setbeamercolor{block title}{bg=white,fg=alert}
-\setbeamercolor{block body}{bg=white}
-
-%New bullet points
-\setbeamertemplate{itemize item}[circle]
-
-\usepackage[url=false,doi=false,isbn=false]{biblatex}
-\usepackage{listings}
-\lstset{basicstyle=\ttfamily\tiny\color{black},breaklines=true,backgroundcolor=\color{lightgray},
-        numbers=left, stepnumber=1, commentstyle=\color{red}, keywordstyle=\color{blue}|,
-        escapeinside=||, stringstyle=\color{deepgreen}, emphstyle=\ttb\color{deepblue} }
-\usepackage{booktabs}
-\usepackage[scale=2]{ccicons}
-\usepackage{subcaption}
-\usepackage{pgfplots}
-\usepackage{xspace}
-\usepgfplotslibrary{dateplot}
-\pgfplotsset{compat=1.16}
-
-\bibliography{/home/aselimov/latex/references}
-\setbeamertemplate{bibliography item}{\insertbiblabel}
-\setbeamerfont{footnote}{size=\scriptsize}
-\setbeamerfont{frametitle}{size=\LARGE}
-
-
-\title{<++>}
-% \date{\today}
-\date{\today}
-\author{Alex Selimov}
-\institute{Georgia Institute of Technology}
-\titlegraphic{\hfill\includegraphics[height=1.5cm]{GTLogo.pdf}}
-
-\begin{document}
-
-\maketitle
-
-\begin{frame}{Overview}
-  \setbeamertemplate{section in toc}[sections numbered]
-  \tableofcontents%[hideallsubsections]
-\end{frame}
-
-\end{document}

scripts/captionify

@@ -1,98 +0,0 @@
-#!/bin/bash
-
-##This script adds a caption to a figure using imagemagick
-####
-#Help
-####
-Help(){
-    echo "Add a caption to an image using imagemagic"
-    echo
-    echo "Syntax: captionify [-h|-d|-o <out_file>|-s <size>|-p <pad>] infile message"
-    echo "options:"
-    echo "-h: Print this help message"
-    echo '-d: Open image defined in $VIEWER'
-    echo "-o: Specify output file, otherwise the output gets written to caption_infile"
-    echo "-s: Specify font size in pixels"
-    echo "infile: The file to be processed"
-    echo "message: The message to be added"
-}
-
-##Image Viewer
-
-args=()
-argnum=0
-outfile=""
-display=0
-pad=20
-
-if [ "$VIEWER" = '' ]; then
-    openin=sxiv
-else
-    openin=$VIEWER
-fi
-
-while [ $# -gt 0 ]; do 
-    unset OPTIND
-    unset OPTARG
-    #Parse Flags
-    while getopts 'hdo:s:p:' options; do
-        case $options in 
-            h)
-                Help
-                break;;
-            d)
-                display=1;;
-            o)
-                outfile="$OPTARG";;
-            s)
-                size="$OPTARG";;
-            p)
-                pad="$OPTARG";;
-        esac
-    done
-    shift $((OPTIND-1))
-    args+=("$1")
-    (( argnum++ ))
-    shift
-done
-
-if [ "$args" = "" ]; then 
-    Help
-elif [ $argnum -gt 2 ]; then 
-    echo "Captionify takes only two positional parameter, please view help"
-elif [ $argnum -lt 2 ]; then 
-    echo "Captionify requires two positional parameters, please view help"
-else
-    infile="${args[0]}"
-    message="${args[1]}"
-    #Set defaults if variable unset
-    if [ "$outfile" = "" ]; then 
-        outfile="cap_$infile"  
-    fi
-    
-    if [ "$size" = "" ]; then
-        ih=$(identify -format %h $infile)
-        echo "Height is $ih"
-        size=$(echo "scale=0; $ih*10/100" | bc )
-        echo "Size is $size"
-    fi
-
-    #Now add some small padding
-    if [ $pad -gt 0 ]; then
-        width=$(identify -format '%w' $infile)
-        height=$(identify -format '%h' $infile)
-        (( height = height + pad ))
-        convert -extent "${width}x${height}" $infile $outfile
-        infile=$outfile
-    fi
-    #Now run the actual imagemagick command
-    convert -gravity center $infile \( -background '#FFF' -fill black -font Helvetica  -size x$size label:"$message" \)\
-            -append $outfile
- 
-
-    if [ $display -eq 1 ]; then
-        $openin $outfile 
-    fi
-fi
-
-exit 1

scripts/colorbar

@@ -1,94 +0,0 @@
-#!/bin/bash
-
-##This creates a red to blue divergent colorbar with specified label and bounds.
-####
-#Help
-####
-Help(){
-    echo "This creates a colorbar image file with specified boundaries and tag"
-    echo
-    echo "Syntax: colorbar [-h|-o outfile|-x width|-y height] caption lobd hibd"
-    echo "options:"
-    echo "-h: print this help"
-    echo "-o: Specify file to write to"
-    echo "-x: Specify width of colorbar image. Cannot be used with -y"
-    echo "-y: Specify height of colorbar image. Cannot be used with -x"
-    echo "caption: Caption for the colorbar"
-    echo "lobd: Lower bound of the color bar"
-    echo "hibd: Upper bound of the color bar"
-}
-
-
-outfile='colorbar.png'
-declare -a args
-argnum=0
-x=0
-y=0
-while [ $# -gt 0 ]; do
-    unset OPTIND
-    unset OPTARG
-    #Parse Flags
-    while getopts ':ho:x:y:' options; do 
-        case $options in
-            h)
-                Help
-                break;;
-            o)
-                outfile="$OPTARG";;
-            x)
-                x="$OPTARG"
-                if [ $y -ne 0 ]; then
-                    echo "Cannot use both -x and -y options"
-                    break
-                fi
-                ;;
-            y)
-                y="$OPTARG"
-                if [ $x -ne 0 ]; then
-                    echo "Cannot use both -x and -y options"
-                    break
-                fi
-                ;;
-            ?)
-                
-        esac
-    done
-    shift $((OPTIND-1))
-    args+=("$1")
-    (( argnum++ ))
-    shift
- done
-
-#Now pull out the required arguments
-if [ "$args" = "" ]; then
-    Help
-elif [ $argnum -ne 3 ]; then 
-    echo "colorbar requires three positional arguments, you have supplied $argnum. Please view help"
-    echo ${args[0]} ${args[1]}
-else
-    msg="${args[0]}"
-    lobd="${args[1]}"
-    hibd="${args[2]}"
-
-    #First copy colorbar file to current directory
-    cp ~/typesetting/figure_templates/colorbar.png $outfile
-
-    #Now create lower and upper labels
-    convert -background " #FFF " -fill black -font Helvetica -size x196 label:"$lobd" tmp1.png
-    convert -background " #FFF " -fill black -font Helvetica -size x196 label:"$hibd" tmp2.png
-    convert +append -gravity center tmp1.png $outfile tmp2.png $outfile
-
-    #Now create caption for image
-    convert -background " #FFF " -fill black -font Helvetica -size x196 label:"$msg" tmp.png
-    convert -append -gravity center tmp.png $outfile $outfile
-
-    #Final step is resizing
-    if [ $x -gt 0 ]; then
-        convert -scale "$x"x $outfile $outfile
-    fi
-    if [ $y -gt 0 ]; then
-        convert -scale x"$y" $outfile $outfile
-    fi
-    rm tmp.png tmp1.png tmp2.png
-    
-fi

scripts/coords

@@ -1,87 +0,0 @@
-#!/bin/bash
-
-##This creates a red to blue divergent colorbar with specified label and bounds.
-####
-#Help
-####
-Help(){
-    echo "This creates a coordinate axis image file with specified x and y labels"
-    echo
-    echo "Syntax: colorbar [-h|-o outfile|-x width|-y height] xlabel ylabel"
-    echo "options:"
-    echo "-h: print this help"
-    echo "-o: Specify file to write to"
-    echo "-x: Specify width of image. Cannot be used with -y"
-    echo "-y: Specify height of mage. Cannot be used with -x"
-    echo "xlabel: Label for x axis"
-    echo "ylabel: Label for y axis"
-}
-
-
-outfile='coords.png'
-declare -a args
-argnum=0
-x=0
-y=0
-while [ $# -gt 0 ]; do
-    unset OPTIND
-    unset OPTARG
-    #Parse Flags
-    while getopts ':ho:x:y:' options; do 
-        case $options in
-            h)
-                Help
-                break;;
-            o)
-                outfile="$OPTARG";;
-            x)
-                x="$OPTARG"
-                if [ $y -ne 0 ]; then
-                    echo "Cannot use both -x and -y options"
-                    break
-                fi
-                ;;
-            y)
-                y="$OPTARG"
-                if [ $x -ne 0 ]; then
-                    echo "Cannot use both -x and -y options"
-                    break
-                fi
-                ;;
-        esac
-    done
-    shift $((OPTIND-1))
-    args+=("$1")
-    (( argnum++ ))
-    shift
- done
-
-#Now pull out the required arguments
-if [ "$args" = "" ]; then
-    Help
-elif [ $argnum -ne 2 ]; then 
-    echo "coords requires three positional arguments, you have supplied $argnum. Please view help"
-    echo ${args[0]} ${args[1]}
-else
-    xlabel="${args[0]}"
-    ylabel="${args[1]}"
-
-    #First copy colorbar file to current directory
-    cp ~/typesetting/figure_templates/coords.png $outfile
-
-    #Now create lower and upper labels
-    convert -background " #FFF " -fill "#ff0000" -font Helvetica -size x180 label:"$xlabel" tmp.png
-    convert +append -gravity south $outfile tmp.png $outfile
-    convert -background " #FFF " -fill "#00ff00" -font Helvetica -size x180 label:"$ylabel" tmp.png
-    convert -append -gravity west tmp.png $outfile $outfile
-
-    #Final step is resizing
-    if [ $x -gt 0 ]; then
-        convert -scale "$x"x $outfile $outfile
-    fi
-    if [ $y -gt 0 ]; then
-        convert -scale x"$y" $outfile $outfile
-    fi
-    rm tmp.png
-    
-fi

scripts/fig_grid

@@ -1,227 +0,0 @@
-#!/bin/bash
-
-# This script uses imagemagick to create grids of images and automatically adds captions to them.
-# There are various grid styles which can be made outlined below
-
-# Style 1 - n by m grid with caption for every row
-# for a 3 by 2 grid it will look like:
-#       ------       ------
-#      |      |     |      |
-#      |      |     |      |
-#       ------       ------
-#       ------       ------
-#      |      |     |      |
-#      |      |     |      |
-#       ------       ------
-#       ------       ------
-#      |      |     |      |
-#      |      |     |      |
-#       ------       ------
-#       
-
-####
-#Help
-####
-Help(){
-    echo "fig_grid combines images into a grid, useful for creating complex figures that can be moved between pandoc/latex and other sources such as word or powerpoint."
-    echo
-    echo "Syntax: fig_grid [-h|-o filename|-c captionfile | -s size | -b | -p padding | -n] style inputs"
-    echo "options:"
-    echo "-h: Prints this help"
-    echo "-o: Specify output file as filename"
-    echo "-c: Path to caption file. Caption file must have specific syntax, please check documentation"
-    echo "-s: Font size for captions in pixels"
-    echo "-b: Add thin black border around images"
-    echo "-p: Add padding around images before combining them "
-    echo "-n: Prevents resizing the images"
-    echo "style: Represents the style of the output figure. Currently only accepts:"
-    echo "          - nxm (example: 3x2): Arranges a grid into n rows and m columns populating the rows first"
-    echo "inputs: Input files to be processed"
-}
-
-####
-#Error
-####
-function fail {
-    printf 'Error: %s\n' "$1" >&2
-    exit "${2-1}"
-}
-
-
-####
-#Add caption to image
-# First argument should be image file path
-# Second argument should be the message
-# Third argument is the padding to add to the image 
-# Fourth argument is the size of the font
-####
-function add_caption {
-    file=$1
-    msg=$2
-    pad=$3
-    size=$4
-    width=$(identify -format '%w' $file)
-    height=$(identify -format '%h' $file)
-    (( height = height+pad ))
-    convert -extent x"$height" $file $file
-    captmp="$RANDOM$RANDOM$RANDOM$RANDOM.png"
-    convert -background " #FFF " -fill black -font Helvetica -size x$size label:"$msg" $captmp
-    convert -append -gravity center $file $captmp $file
-    rm $captmp
-}
-
-args=()
-argnum=0
-csize=0
-cpad=0
-border=0
-pad=0
-resize=1
-output="output.png"
-while [ $# -gt 0 ]; do
-    unset OPTIND
-    unset OPTARG
-    #Parse Flags
-    while getopts ':ho:c:s:bp:n' options; do 
-        case $options in
-            h)
-                Help
-                break;;
-            o)
-                output=$OPTARG;;
-            c)
-                captionfile=$OPTARG;;
-            s)
-                csize=$OPTARG;;
-            b)
-                border=2;;
-            p)
-                pad=$OPTARG;;
-            n)
-                resize=0;;
-        esac
-    done
-    shift $((OPTIND-1))
-    args+=("$1")
-     (( argnum++ ))
-     shift
- done
-
-if [ $argnum -eq 0 ]; then
-    Help
-    exit
-fi
-
-#Specify tmp file prefix
-tmp=$(echo $RANDOM$RANDOM$RANDOM)
-#First calculate the number of inputs to be expected, then check to make sure enough images are provided
-style=${args[0]}
-calc_style="${style/x/\*}"
-expfiles=$(echo $calc_style | bc)
-
-if [ $expfiles -ne $(( argnum -1 )) ]; then
-    fail "expected $expfiles files but only got $(( argnum - 1 )) files"
-fi
-
-#Now read the caption file into an array if it exists
-if [ "$captionfile" != "" ]; then
-    mapfile -t captions < $captionfile
-fi
-
-#Finally generate the correct images. By default this will size all images to the size of the largest image to create regular spacings. It does this by scaling and the extent command
-
-#First find max image size
-max_x=0
-max_y=0
-
-for i in $(seq 1 $((argnum-1)) ); do
-    if [ ! -f ${args[$i]} ]; then
-        fail "File ${args[$i]} doesn't exist"
-    fi
-    x=$(identify -format '%w' ${args[$i]})
-    y=$(identify -format '%h' ${args[$i]})
-    if [ "$x" -gt "$max_x" ]; then
-        max_x=$x
-    fi
-    if [ "$y" -gt "$max_y" ]; then
-        max_y=$y
-    fi
-done
-
-
-#Get caption size 
-
-if [ $csize -eq 0 ]; then
-    csize=$(echo "scale=0; $max_y*10/100" | bc)
-fi
-
-#Get padding if necessary
-if [ $pad -eq 0 ]; then 
-    pad=$(echo "scale=0; $max_y*5/100" | bc)
-    cpad=$(echo "scale=0; $csize/2" | bc)
-fi
-#Now resize all of the images
-if [ $resize -eq 1 ]; then 
-    echo "Resizing all images to $max_x $max_y"
-    for i in $(seq 1 $((argnum-1)) ); do
-        info=$(identify ${args[$i]} ) || fail "Failed to identify image ${args[$i]}"
-        x=$(identify -format '%w' ${args[$i]})
-        y=$(identify -format '%h' ${args[$i]})
-
-        diffx=$(echo " $max_x - $x" | bc )
-        diffy=$(echo "$max_y - $y "  | bc )
-
-        if [ $diffx -eq 0 ]; then 
-            cp ${args[$i]} $tmp$i.png 
-        elif [ $diffy -eq 0 ]; then 
-            cp ${args[$i]} $tmp$i.png 
-        elif [ $diffy -gt $diffx ]; then
-            convert -scale "$max_x"x ${args[$i]} $tmp$i.png || fail "Failed to scale image"
-        elif [ $diffx -gt $diffy ]; then
-            convert -scale x"$max_y" ${args[$i]} $tmp$i.png || fail "Failed to scale image"
-        fi
-        convert -extent "$max_x"x"$max_y" -gravity center -border "$border"x$border -bordercolor black $tmp$i.png $tmp$i.png || fail "Failed to add padding to image"
-    done
-else
-    for i in $(seq 1 $((argnum-1)) ); do
-        cp ${args[$i]} $tmp$i.png
-    done
-fi
-
-cap_num=1
-
-if [ "${captions[0]}" = "each" ]; then
-    for i in $(seq 1 $((argnum-1)) ); do
-        add_caption $tmp$i.png "${captions[$cap_num]}" $cpad $csize || fail "Couldn't add caption"
-        (( cap_num++ ))
-    done
-fi
-
-k=$(( i+1 ))
-#Now build the actually images based on style
-if [[ "$style" == *"x"* ]]; then
-    vertappend=""
-    rows=${style%x*}
-    columns=${style#*x}
-    echo "Combining images into a $rows by $columns grid"
-    l=1
-    for i in $(seq 1 $rows); do 
-        horizappend=""
-        for j in $(seq 1 $columns); do 
-            horizappend="$horizappend ( -border $pad -bordercolor white $tmp$l.png )"
-            (( l++ ))
-        done
-        convert $horizappend +append $tmp$k.png
-        if [ "${captions[0]}" = "rows" ]; then 
-            add_caption $tmp$k.png "${captions[$cap_num]}" $cpad $csize || fail "Couldn't add caption"
-            (( cap_num++ ))
-        fi 
-        vertappend="$vertappend $tmp$k.png"
-        (( k++ ))
-    done
-    convert -gravity center $vertappend -append $output
-fi
-
-rm $tmp*.png
-
-

scripts/md2beamer

@@ -1,10 +0,0 @@
-#!/bin/bash 
-
-#This script is used to compile md file using markdown 
-if [ "$2" = '' ]; then
-    out=${1/md/pdf}
-else
-    out=$2
-fi
-
-pandoc -t beamer  --citeproc --pdf-engine xelatex pres.md --bibliography /home/aselimov/typesetting/references.bib --csl /home/aselimov/typesetting/csl/custom_beamer_ref.csl   -V theme:auriga -V colortheme:auriga  -o $out

scripts/md2doc

@@ -1,10 +0,0 @@
-#!/bin/bash 
-
-#This script is used to compile md file using markdown 
-if [ "$2" = '' ]; then
-    out=${1/md/docx}
-else
-    out=$2
-fi
-pandoc $1  --lua-filter="$HOME"/typesetting/pandoc_lua_filters/scholarly-metadata.lua --lua-filter="$HOME"/typesetting/pandoc_lua_filters/author-info-blocks.lua  --lua-filter="$HOME"/typesetting/pandoc_lua_filters/pagebreak.lua --filter=pandoc-crossref --bibliography /home/aselimov/typesetting/references.bib --csl /home/aselimov/typesetting/csl/ieee.csl --citeproc -o $out
-

scripts/md2docx

@@ -1,10 +0,0 @@
-#!/bin/bash 
-
-#This script is used to compile md file using markdown 
-if [ "$2" = '' ]; then
-    out=${1/md/docx}
-else
-    out=$2
-fi
-pandoc $1  --lua-filter="$HOME"/typesetting/pandoc_lua_filters/scholarly-metadata.lua --lua-filter="$HOME"/typesetting/pandoc_lua_filters/author-info-blocks.lua  --lua-filter="$HOME"/typesetting/pandoc_lua_filters/pagebreak.lua --filter=pandoc-crossref --citeproc --bibliography=/home/aselimov/typesetting/references.bib --csl=/home/aselimov/typesetting/csl/els.csl -o $out
-

scripts/md2pdf

@@ -1,10 +0,0 @@
-#!/bin/bash 
-
-#This script is used to compile md file using markdown 
-if [ "$2" = '' ]; then
-    out=${1/md/pdf}
-else
-    out=$2
-fi
-pandoc $1 --pdf-engine=xelatex --lua-filter="$HOME"/typesetting/pandoc_lua_filters/scholarly-metadata.lua --lua-filter="$HOME"/typesetting/pandoc_lua_filters/author-info-blocks.lua  --filter=pandoc-crossref --citeproc --bibliography=/home/aselimov/typesetting/references.bib --csl=/home/aselimov/typesetting/csl/els.csl  -o $out
-

templates/article.tex

@@ -1,514 +0,0 @@
-% Options for packages loaded elsewhere
-\PassOptionsToPackage{unicode$for(hyperrefoptions)$,$hyperrefoptions$$endfor$}{hyperref}
-\PassOptionsToPackage{hyphens}{url}
-$if(colorlinks)$
-\PassOptionsToPackage{dvipsnames,svgnames*,x11names*}{xcolor}
-$endif$
-$if(dir)$
-$if(latex-dir-rtl)$
-\PassOptionsToPackage{RTLdocument}{bidi}
-$endif$
-$endif$
-$if(CJKmainfont)$
-\PassOptionsToPackage{space}{xeCJK}
-$endif$
-%
-\documentclass[
-$if(fontsize)$
-  $fontsize$,
-$endif$
-$if(lang)$
-  $babel-lang$,
-$endif$
-$if(papersize)$
-  $papersize$paper,
-$endif$
-$if(beamer)$
-  ignorenonframetext,
-$if(handout)$
-  handout,
-$endif$
-$if(aspectratio)$
-  aspectratio=$aspectratio$,
-$endif$
-$endif$
-$for(classoption)$
-  $classoption$$sep$,
-$endfor$
-]{$documentclass$}
-$if(beamer)$
-$if(background-image)$
-\usebackgroundtemplate{%
-  \includegraphics[width=\paperwidth]{$background-image$}%
-}
-$endif$
-\usepackage{pgfpages}
-\setbeamertemplate{caption}[numbered]
-\setbeamertemplate{caption label separator}{: }
-\setbeamercolor{caption name}{fg=normal text.fg}
-\beamertemplatenavigationsymbols$if(navigation)$$navigation$$else$empty$endif$
-$for(beameroption)$
-\setbeameroption{$beameroption$}
-$endfor$
-% Prevent slide breaks in the middle of a paragraph
-\widowpenalties 1 10000
-\raggedbottom
-$if(section-titles)$
-\setbeamertemplate{part page}{
-  \centering
-  \begin{beamercolorbox}[sep=16pt,center]{part title}
-    \usebeamerfont{part title}\insertpart\par
-  \end{beamercolorbox}
-}
-\setbeamertemplate{section page}{
-  \centering
-  \begin{beamercolorbox}[sep=12pt,center]{part title}
-    \usebeamerfont{section title}\insertsection\par
-  \end{beamercolorbox}
-}
-\setbeamertemplate{subsection page}{
-  \centering
-  \begin{beamercolorbox}[sep=8pt,center]{part title}
-    \usebeamerfont{subsection title}\insertsubsection\par
-  \end{beamercolorbox}
-}
-\AtBeginPart{
-  \frame{\partpage}
-}
-\AtBeginSection{
-  \ifbibliography
-  \else
-    \frame{\sectionpage}
-  \fi
-}
-\AtBeginSubsection{
-  \frame{\subsectionpage}
-}
-$endif$
-$endif$
-$if(beamerarticle)$
-\usepackage{beamerarticle} % needs to be loaded first
-$endif$
-$if(fontfamily)$
-\usepackage[$for(fontfamilyoptions)$$fontfamilyoptions$$sep$,$endfor$]{$fontfamily$}
-$else$
-\usepackage{lmodern}
-$endif$
-$if(linestretch)$
-\usepackage{setspace}
-$endif$
-\usepackage{amssymb,amsmath}
-\usepackage{ifxetex,ifluatex}
-\ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex
-  \usepackage[$if(fontenc)$$fontenc$$else$T1$endif$]{fontenc}
-  \usepackage[utf8]{inputenc}
-  \usepackage{textcomp} % provide euro and other symbols
-\else % if luatex or xetex
-$if(mathspec)$
-  \ifxetex
-    \usepackage{mathspec}
-  \else
-    \usepackage{unicode-math}
-  \fi
-$else$
-  \usepackage{unicode-math}
-$endif$
-  \defaultfontfeatures{Scale=MatchLowercase}
-  \defaultfontfeatures[\rmfamily]{Ligatures=TeX,Scale=1}
-$if(mainfont)$
-  \setmainfont[$for(mainfontoptions)$$mainfontoptions$$sep$,$endfor$]{$mainfont$}
-$endif$
-$if(sansfont)$
-  \setsansfont[$for(sansfontoptions)$$sansfontoptions$$sep$,$endfor$]{$sansfont$}
-$endif$
-$if(monofont)$
-  \setmonofont[$for(monofontoptions)$$monofontoptions$$sep$,$endfor$]{$monofont$}
-$endif$
-$for(fontfamilies)$
-  \newfontfamily{$fontfamilies.name$}[$for(fontfamilies.options)$$fontfamilies.options$$sep$,$endfor$]{$fontfamilies.font$}
-$endfor$
-$if(mathfont)$
-$if(mathspec)$
-  \ifxetex
-    \setmathfont(Digits,Latin,Greek)[$for(mathfontoptions)$$mathfontoptions$$sep$,$endfor$]{$mathfont$}
-  \else
-    \setmathfont[$for(mathfontoptions)$$mathfontoptions$$sep$,$endfor$]{$mathfont$}
-  \fi
-$else$
-  \setmathfont[$for(mathfontoptions)$$mathfontoptions$$sep$,$endfor$]{$mathfont$}
-$endif$
-$endif$
-$if(CJKmainfont)$
-  \ifxetex
-    \usepackage{xeCJK}
-    \setCJKmainfont[$for(CJKoptions)$$CJKoptions$$sep$,$endfor$]{$CJKmainfont$}
-  \fi
-$endif$
-$if(luatexjapresetoptions)$
-  \ifluatex
-    \usepackage[$for(luatexjapresetoptions)$$luatexjapresetoptions$$sep$,$endfor$]{luatexja-preset}
-  \fi
-$endif$
-$if(CJKmainfont)$
-  \ifluatex
-    \usepackage[$for(luatexjafontspecoptions)$$luatexjafontspecoptions$$sep$,$endfor$]{luatexja-fontspec}
-    \setmainjfont[$for(CJKoptions)$$CJKoptions$$sep$,$endfor$]{$CJKmainfont$}
-  \fi
-$endif$
-\fi
-$if(beamer)$
-$if(theme)$
-\usetheme[$for(themeoptions)$$themeoptions$$sep$,$endfor$]{$theme$}
-$endif$
-$if(colortheme)$
-\usecolortheme{$colortheme$}
-$endif$
-$if(fonttheme)$
-\usefonttheme{$fonttheme$}
-$endif$
-$if(mainfont)$
-\usefonttheme{serif} % use mainfont rather than sansfont for slide text
-$endif$
-$if(innertheme)$
-\useinnertheme{$innertheme$}
-$endif$
-$if(outertheme)$
-\useoutertheme{$outertheme$}
-$endif$
-$endif$
-% Use upquote if available, for straight quotes in verbatim environments
-\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
-\IfFileExists{microtype.sty}{% use microtype if available
-  \usepackage[$for(microtypeoptions)$$microtypeoptions$$sep$,$endfor$]{microtype}
-  \UseMicrotypeSet[protrusion]{basicmath} % disable protrusion for tt fonts
-}{}
-$if(indent)$
-$else$
-\makeatletter
-\@ifundefined{KOMAClassName}{% if non-KOMA class
-  \IfFileExists{parskip.sty}{%
-    \usepackage{parskip}
-  }{% else
-    \setlength{\parindent}{0pt}
-    \setlength{\parskip}{6pt plus 2pt minus 1pt}}
-}{% if KOMA class
-  \KOMAoptions{parskip=half}}
-\makeatother
-$endif$
-$if(verbatim-in-note)$
-\usepackage{fancyvrb}
-$endif$
-\usepackage{xcolor}
-\IfFileExists{xurl.sty}{\usepackage{xurl}}{} % add URL line breaks if available
-\IfFileExists{bookmark.sty}{\usepackage{bookmark}}{\usepackage{hyperref}}
-\hypersetup{
-$if(title-meta)$
-  pdftitle={$title-meta$},
-$endif$
-$if(author-meta)$
-  pdfauthor={$author-meta$},
-$endif$
-$if(lang)$
-  pdflang={$lang$},
-$endif$
-$if(subject)$
-  pdfsubject={$subject$},
-$endif$
-$if(keywords)$
-  pdfkeywords={$for(keywords)$$keywords$$sep$, $endfor$},
-$endif$
-$if(colorlinks)$
-  colorlinks=true,
-  linkcolor=$if(linkcolor)$$linkcolor$$else$Maroon$endif$,
-  filecolor=$if(filecolor)$$filecolor$$else$Maroon$endif$,
-  citecolor=$if(citecolor)$$citecolor$$else$Blue$endif$,
-  urlcolor=$if(urlcolor)$$urlcolor$$else$Blue$endif$,
-$else$
-  hidelinks,
-$endif$
-  pdfcreator={LaTeX via pandoc}}
-\urlstyle{same} % disable monospaced font for URLs
-$if(verbatim-in-note)$
-\VerbatimFootnotes % allow verbatim text in footnotes
-$endif$
-$if(geometry)$
-$if(beamer)$
-\geometry{$for(geometry)$$geometry$$sep$,$endfor$}
-$else$
-\usepackage[$for(geometry)$$geometry$$sep$,$endfor$]{geometry}
-$endif$
-$endif$
-$if(beamer)$
-\newif\ifbibliography
-$endif$
-$if(listings)$
-\usepackage{listings}
-\newcommand{\passthrough}[1]{#1}
-\lstset{defaultdialect=[5.3]Lua}
-\lstset{defaultdialect=[x86masm]Assembler}
-$endif$
-$if(lhs)$
-\lstnewenvironment{code}{\lstset{language=Haskell,basicstyle=\small\ttfamily}}{}
-$endif$
-$if(highlighting-macros)$
-$highlighting-macros$
-$endif$
-$if(tables)$
-\usepackage{longtable,booktabs}
-$if(beamer)$
-\usepackage{caption}
-% Make caption package work with longtable
-\makeatletter
-\def\fnum@table{\tablename~\thetable}
-\makeatother
-$else$
-% Correct order of tables after \paragraph or \subparagraph
-\usepackage{etoolbox}
-\makeatletter
-\patchcmd\longtable{\par}{\if@noskipsec\mbox{}\fi\par}{}{}
-\makeatother
-% Allow footnotes in longtable head/foot
-\IfFileExists{footnotehyper.sty}{\usepackage{footnotehyper}}{\usepackage{footnote}}
-\makesavenoteenv{longtable}
-$endif$
-$endif$
-$if(graphics)$
-\usepackage{graphicx}
-\makeatletter
-\def\maxwidth{\ifdim\Gin@nat@width>\linewidth\linewidth\else\Gin@nat@width\fi}
-\def\maxheight{\ifdim\Gin@nat@height>\textheight\textheight\else\Gin@nat@height\fi}
-\makeatother
-% Scale images if necessary, so that they will not overflow the page
-% margins by default, and it is still possible to overwrite the defaults
-% using explicit options in \includegraphics[width, height, ...]{}
-\setkeys{Gin}{width=\maxwidth,height=\maxheight,keepaspectratio}
-% Set default figure placement to htbp
-\makeatletter
-\def\fps@figure{htbp}
-\makeatother
-$endif$
-$if(links-as-notes)$
-% Make links footnotes instead of hotlinks:
-\DeclareRobustCommand{\href}[2]{#2\footnote{\url{#1}}}
-$endif$
-$if(strikeout)$
-\usepackage[normalem]{ulem}
-% Avoid problems with \sout in headers with hyperref
-\pdfstringdefDisableCommands{\renewcommand{\sout}{}}
-$endif$
-\setlength{\emergencystretch}{3em} % prevent overfull lines
-\providecommand{\tightlist}{%
-  \setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}
-$if(numbersections)$
-\setcounter{secnumdepth}{$if(secnumdepth)$$secnumdepth$$else$5$endif$}
-$else$
-\setcounter{secnumdepth}{-\maxdimen} % remove section numbering
-$endif$
-$if(beamer)$
-$else$
-$if(block-headings)$
-% Make \paragraph and \subparagraph free-standing
-\ifx\paragraph\undefined\else
-  \let\oldparagraph\paragraph
-  \renewcommand{\paragraph}[1]{\oldparagraph{#1}\mbox{}}
-\fi
-\ifx\subparagraph\undefined\else
-  \let\oldsubparagraph\subparagraph
-  \renewcommand{\subparagraph}[1]{\oldsubparagraph{#1}\mbox{}}
-\fi
-$endif$
-$endif$
-$if(pagestyle)$
-\pagestyle{$pagestyle$}
-$endif$
-$for(header-includes)$
-$header-includes$
-$endfor$
-$if(lang)$
-\ifxetex
-  % Load polyglossia as late as possible: uses bidi with RTL langages (e.g. Hebrew, Arabic)
-  \usepackage{polyglossia}
-  \setmainlanguage[$for(polyglossia-lang.options)$$polyglossia-lang.options$$sep$,$endfor$]{$polyglossia-lang.name$}
-$for(polyglossia-otherlangs)$
-  \setotherlanguage[$for(polyglossia-otherlangs.options)$$polyglossia-otherlangs.options$$sep$,$endfor$]{$polyglossia-otherlangs.name$}
-$endfor$
-\else
-  \usepackage[shorthands=off,$for(babel-otherlangs)$$babel-otherlangs$,$endfor$main=$babel-lang$]{babel}
-$if(babel-newcommands)$
-  $babel-newcommands$
-$endif$
-\fi
-$endif$
-\ifluatex
-  \usepackage{selnolig}  % disable illegal ligatures
-\fi
-$if(dir)$
-\ifxetex
-  % Load bidi as late as possible as it modifies e.g. graphicx
-  \usepackage{bidi}
-\fi
-\ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex
-  \TeXXeTstate=1
-  \newcommand{\RL}[1]{\beginR #1\endR}
-  \newcommand{\LR}[1]{\beginL #1\endL}
-  \newenvironment{RTL}{\beginR}{\endR}
-  \newenvironment{LTR}{\beginL}{\endL}
-\fi
-$endif$
-$if(natbib)$
-\usepackage[$natbiboptions$]{natbib}
-\bibliographystyle{$if(biblio-style)$$biblio-style$$else$plainnat$endif$}
-$endif$
-$if(biblatex)$
-\usepackage[$if(biblio-style)$style=$biblio-style$,$endif$$for(biblatexoptions)$$biblatexoptions$$sep$,$endfor$]{biblatex}
-$for(bibliography)$
-\addbibresource{$bibliography$}
-$endfor$
-$endif$
-$if(csl-refs)$
-\newlength{\cslhangindent}
-\setlength{\cslhangindent}{1.5em}
-\newlength{\csllabelwidth}
-\setlength{\csllabelwidth}{3em}
-\newenvironment{CSLReferences}[3] % #1 hanging-ident, #2 entry spacing
- {% don't indent paragraphs
-  \setlength{\parindent}{0pt}
-  % turn on hanging indent if param 1 is 1
-  \ifodd #1 \everypar{\setlength{\hangindent}{\cslhangindent}}\ignorespaces\fi
-  % set entry spacing
-  \ifnum #2 > 0
-  \setlength{\parskip}{#2\baselineskip}
-  \fi
- }%
- {}
-\usepackage{calc} % for \widthof, \maxof
-\newcommand{\CSLBlock}[1]{#1\hfill\break}
-\newcommand{\CSLLeftMargin}[1]{\parbox[t]{\maxof{\widthof{#1}}{\csllabelwidth}}{#1}}
-\newcommand{\CSLRightInline}[1]{\parbox[t]{\linewidth}{#1}}
-\newcommand{\CSLIndent}[1]{\hspace{\cslhangindent}#1}
-$endif$
-
-$if(title)$
-\title{$title$$if(thanks)$\thanks{$thanks$}$endif$}
-$endif$
-$if(subtitle)$
-$if(beamer)$
-$else$
-\usepackage{etoolbox}
-\makeatletter
-\providecommand{\subtitle}[1]{% add subtitle to \maketitle
-  \apptocmd{\@title}{\par {\large #1 \par}}{}{}
-}
-\makeatother
-$endif$
-\subtitle{$subtitle$}
-$endif$
-\author{$for(author)$$author$$sep$ \and $endfor$}
-\date{$date$}
-$if(beamer)$
-$if(institute)$
-\institute{$for(institute)$$institute$$sep$ \and $endfor$}
-$endif$
-$if(titlegraphic)$
-\titlegraphic{\includegraphics{$titlegraphic$}}
-$endif$
-$if(logo)$
-\logo{\includegraphics{$logo$}}
-$endif$
-$endif$
-
-\begin{document}
-$if(has-frontmatter)$
-\frontmatter
-$endif$
-$if(title)$
-$if(beamer)$
-\frame{\titlepage}
-$else$
-\maketitle
-$endif$
-$if(abstract)$
-\begin{abstract}
-$abstract$
-\end{abstract}
-$endif$
-$endif$
-
-$for(include-before)$
-$include-before$
-
-$endfor$
-$if(toc)$
-$if(toc-title)$
-\renewcommand*\contentsname{$toc-title$}
-$endif$
-$if(beamer)$
-\begin{frame}[allowframebreaks]
-$if(toc-title)$
-  \frametitle{$toc-title$}
-$endif$
-  \tableofcontents[hideallsubsections]
-\end{frame}
-$else$
-{
-$if(colorlinks)$
-\hypersetup{linkcolor=$if(toccolor)$$toccolor$$else$$endif$}
-$endif$
-\setcounter{tocdepth}{$toc-depth$}
-\tableofcontents
-}
-$endif$
-$endif$
-$if(lot)$
-\listoftables
-$endif$
-$if(lof)$
-\listoffigures
-$endif$
-$if(linestretch)$
-\setstretch{$linestretch$}
-$endif$
-$if(has-frontmatter)$
-\mainmatter
-$endif$
-$body$
-
-$if(has-frontmatter)$
-\backmatter
-$endif$
-$if(natbib)$
-$if(bibliography)$
-$if(biblio-title)$
-$if(has-chapters)$
-\renewcommand\bibname{$biblio-title$}
-$else$
-\renewcommand\refname{$biblio-title$}
-$endif$
-$endif$
-$if(beamer)$
-\begin{frame}[allowframebreaks]{$biblio-title$}
-  \bibliographytrue
-$endif$
-  \bibliography{$for(bibliography)$$bibliography$$sep$,$endfor$}
-$if(beamer)$
-\end{frame}
-$endif$
-
-$endif$
-$endif$
-$if(biblatex)$
-$if(beamer)$
-\begin{frame}[allowframebreaks]{$biblio-title$}
-  \bibliographytrue
-  \printbibliography[heading=none]
-\end{frame}
-$else$
-\printbibliography$if(biblio-title)$[title=$biblio-title$]$endif$
-$endif$
-
-$endif$
-$for(include-after)$
-$include-after$
-
-$endfor$
-\end{document}

templates/press.beamer

@@ -1,517 +0,0 @@
-% Options for packages loaded elsewhere
-\PassOptionsToPackage{unicode$for(hyperrefoptions)$,$hyperrefoptions$$endfor$}{hyperref}
-\PassOptionsToPackage{hyphens}{url}
-$if(colorlinks)$
-\PassOptionsToPackage{dvipsnames,svgnames*,x11names*}{xcolor}
-$endif$
-$if(dir)$
-$if(latex-dir-rtl)$
-\PassOptionsToPackage{RTLdocument}{bidi}
-$endif$
-$endif$
-$if(CJKmainfont)$
-\PassOptionsToPackage{space}{xeCJK}
-$endif$
-%
-\documentclass[
-14pt,
-$if(lang)$
-  $babel-lang$,
-$endif$
-$if(papersize)$
-  $papersize$paper,
-$endif$
-$if(beamer)$
-  ignorenonframetext,
-$if(handout)$
-  handout,
-$endif$
-$if(aspectratio)$
-  aspectratio=$aspectratio$,
-$endif$
-$endif$
-$for(classoption)$
-  $classoption$$sep$,
-$endfor$
-]{$documentclass$}
-$if(beamer)$
-$if(background-image)$
-\usebackgroundtemplate{%
-  \includegraphics[width=\paperwidth]{$background-image$}%
-}
-$endif$
-\usepackage{pgfpages}
-\setbeamertemplate{caption}[numbered]
-\setbeamertemplate{caption label separator}{: }
-\setbeamercolor{caption name}{fg=normal text.fg}
-\setbeamerfont{footnote}{size=\tiny}
-\beamertemplatenavigationsymbols$if(navigation)$$navigation$$else$empty$endif$
-$for(beameroption)$
-\setbeameroption{$beameroption$}
-$endfor$
-% Prevent slide breaks in the middle of a paragraph
-\widowpenalties 1 10000
-\raggedbottom
-$if(section-titles)$
-\setbeamertemplate{part page}{
-  \centering
-  \begin{beamercolorbox}[sep=16pt,center]{part title}
-    \usebeamerfont{part title}\insertpart\par
-  \end{beamercolorbox}
-}
-\setbeamertemplate{section page}{
-  \centering
-  \begin{beamercolorbox}[sep=12pt,center]{part title}
-    \usebeamerfont{section title}\insertsection\par
-  \end{beamercolorbox}
-}
-\setbeamertemplate{subsection page}{
-  \centering
-  \begin{beamercolorbox}[sep=8pt,center]{part title}
-    \usebeamerfont{subsection title}\insertsubsection\par
-  \end{beamercolorbox}
-}
-\AtBeginPart{
-  \frame{\partpage}
-}
-\AtBeginSection{
-  \ifbibliography
-  \else
-    \frame{\sectionpage}
-  \fi
-}
-\AtBeginSubsection{
-  \frame{\subsectionpage}
-}
-$endif$
-$endif$
-$if(beamerarticle)$
-\usepackage{beamerarticle} % needs to be loaded first
-$endif$
-$if(fontfamily)$
-\usepackage[$for(fontfamilyoptions)$$fontfamilyoptions$$sep$,$endfor$]{$fontfamily$}
-$else$
-\usepackage{lmodern}
-$endif$
-$if(linestretch)$
-\usepackage{setspace}
-$endif$
-\usepackage{amssymb,amsmath}
-\usepackage{ifxetex,ifluatex}
-\ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex
-  \usepackage[$if(fontenc)$$fontenc$$else$T1$endif$]{fontenc}
-  \usepackage[utf8]{inputenc}
-  \usepackage{textcomp} % provide euro and other symbols
-\else % if luatex or xetex
-$if(mathspec)$
-  \ifxetex
-    \usepackage{mathspec}
-  \else
-    \usepackage{unicode-math}
-  \fi
-$else$
-  \usepackage{unicode-math}
-$endif$
-  \defaultfontfeatures{Scale=MatchLowercase}
-  \defaultfontfeatures[\rmfamily]{Ligatures=TeX,Scale=1}
-$if(mainfont)$
-  \setmainfont[$for(mainfontoptions)$$mainfontoptions$$sep$,$endfor$]{$mainfont$}
-$endif$
-$if(sansfont)$
-  \setsansfont[$for(sansfontoptions)$$sansfontoptions$$sep$,$endfor$]{$sansfont$}
-$endif$
-$if(monofont)$
-  \setmonofont[$for(monofontoptions)$$monofontoptions$$sep$,$endfor$]{$monofont$}
-$endif$
-$for(fontfamilies)$
-  \newfontfamily{$fontfamilies.name$}[$for(fontfamilies.options)$$fontfamilies.options$$sep$,$endfor$]{$fontfamilies.font$}
-$endfor$
-$if(mathfont)$
-$if(mathspec)$
-  \ifxetex
-    \setmathfont(Digits,Latin,Greek)[$for(mathfontoptions)$$mathfontoptions$$sep$,$endfor$]{$mathfont$}
-  \else
-    \setmathfont[$for(mathfontoptions)$$mathfontoptions$$sep$,$endfor$]{$mathfont$}
-  \fi
-$else$
-  \setmathfont[$for(mathfontoptions)$$mathfontoptions$$sep$,$endfor$]{$mathfont$}
-$endif$
-$endif$
-$if(CJKmainfont)$
-  \ifxetex
-    \usepackage{xeCJK}
-    \setCJKmainfont[$for(CJKoptions)$$CJKoptions$$sep$,$endfor$]{$CJKmainfont$}
-  \fi
-$endif$
-$if(luatexjapresetoptions)$
-  \ifluatex
-    \usepackage[$for(luatexjapresetoptions)$$luatexjapresetoptions$$sep$,$endfor$]{luatexja-preset}
-  \fi
-$endif$
-$if(CJKmainfont)$
-  \ifluatex
-    \usepackage[$for(luatexjafontspecoptions)$$luatexjafontspecoptions$$sep$,$endfor$]{luatexja-fontspec}
-    \setmainjfont[$for(CJKoptions)$$CJKoptions$$sep$,$endfor$]{$CJKmainfont$}
-  \fi
-$endif$
-\fi
-$if(beamer)$
-$if(theme)$
-\usetheme[$for(themeoptions)$$themeoptions$$sep$,$endfor$]{$theme$}
-\definecolor{red}{RGB}{181, 23, 0}
-\definecolor{blue}{RGB}{0, 118, 186}
-\definecolor{gray}{RGB}{146, 146, 146}
-$endif$
-$if(colortheme)$
-\usecolortheme{$colortheme$}
-$endif$
-$if(fonttheme)$
-\usefonttheme{$fonttheme$}
-$endif$
-$if(mainfont)$
-\usefonttheme{serif} % use mainfont rather than sansfont for slide text
-$endif$
-$if(innertheme)$
-\useinnertheme{$innertheme$}
-$endif$
-$if(outertheme)$
-\useoutertheme{$outertheme$}
-$endif$
-$endif$
-% Use upquote if available, for straight quotes in verbatim environments
-\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
-\IfFileExists{microtype.sty}{% use microtype if available
-  \usepackage[$for(microtypeoptions)$$microtypeoptions$$sep$,$endfor$]{microtype}
-  \UseMicrotypeSet[protrusion]{basicmath} % disable protrusion for tt fonts
-}{}
-$if(indent)$
-$else$
-\makeatletter
-\@ifundefined{KOMAClassName}{% if non-KOMA class
-  \IfFileExists{parskip.sty}{%
-    \usepackage{parskip}
-  }{% else
-    \setlength{\parindent}{0pt}
-    \setlength{\parskip}{6pt plus 2pt minus 1pt}}
-}{% if KOMA class
-  \KOMAoptions{parskip=half}}
-\makeatother
-$endif$
-$if(verbatim-in-note)$
-\usepackage{fancyvrb}
-$endif$
-\usepackage{xcolor}
-\IfFileExists{xurl.sty}{\usepackage{xurl}}{} % add URL line breaks if available
-\IfFileExists{bookmark.sty}{\usepackage{bookmark}}{\usepackage{hyperref}}
-\setlength{\abovecaptionskip}{0pt}
-\hypersetup{
-$if(title-meta)$
-  pdftitle={$title-meta$},
-$endif$
-$if(author-meta)$
-  pdfauthor={$author-meta$},
-$endif$
-$if(lang)$
-  pdflang={$lang$},
-$endif$
-$if(subject)$
-  pdfsubject={$subject$},
-$endif$
-$if(keywords)$
-  pdfkeywords={$for(keywords)$$keywords$$sep$, $endfor$},
-$endif$
-$if(colorlinks)$
-  colorlinks=true,
-  linkcolor=$if(linkcolor)$$linkcolor$$else$Maroon$endif$,
-  filecolor=$if(filecolor)$$filecolor$$else$Maroon$endif$,
-  citecolor=$if(citecolor)$$citecolor$$else$Blue$endif$,
-  urlcolor=$if(urlcolor)$$urlcolor$$else$Blue$endif$,
-$else$
-  hidelinks,
-$endif$
-  pdfcreator={LaTeX via pandoc}}
-\urlstyle{same} % disable monospaced font for URLs
-$if(verbatim-in-note)$
-\VerbatimFootnotes % allow verbatim text in footnotes
-$endif$
-$if(geometry)$
-$if(beamer)$
-\geometry{$for(geometry)$$geometry$$sep$,$endfor$}
-$else$
-\usepackage[$for(geometry)$$geometry$$sep$,$endfor$]{geometry}
-$endif$
-$endif$
-$if(beamer)$
-\newif\ifbibliography
-$endif$
-$if(listings)$
-\usepackage{listings}
-\newcommand{\passthrough}[1]{#1}
-\lstset{defaultdialect=[5.3]Lua}
-\lstset{defaultdialect=[x86masm]Assembler}
-$endif$
-$if(lhs)$
-\lstnewenvironment{code}{\lstset{language=Haskell,basicstyle=\small\ttfamily}}{}
-$endif$
-$if(highlighting-macros)$
-$highlighting-macros$
-$endif$
-$if(tables)$
-\usepackage{longtable,booktabs}
-$if(beamer)$
-%\usepackage{caption}
-% Make caption package work with longtable
-\makeatletter
-\def\fnum@table{\tablename~\thetable}
-\makeatother
-$else$
-% Correct order of tables after \paragraph or \subparagraph
-\usepackage{etoolbox}
-\makeatletter
-\patchcmd\longtable{\par}{\if@noskipsec\mbox{}\fi\par}{}{}
-\makeatother
-% Allow footnotes in longtable head/foot
-\IfFileExists{footnotehyper.sty}{\usepackage{footnotehyper}}{\usepackage{footnote}}
-\makesavenoteenv{longtable}
-$endif$
-$endif$
-$if(graphics)$
-\usepackage{graphicx}
-\makeatletter
-\def\maxwidth{\ifdim\Gin@nat@width>\linewidth\linewidth\else\Gin@nat@width\fi}
-\def\maxheight{\ifdim\Gin@nat@height>\textheight\textheight\else\Gin@nat@height\fi}
-\makeatother
-% Scale images if necessary, so that they will not overflow the page
-% margins by default, and it is still possible to overwrite the defaults
-% using explicit options in \includegraphics[width, height, ...]{}
-\setkeys{Gin}{width=\maxwidth,height=\maxheight,keepaspectratio}
-% Set default figure placement to htbp
-\makeatletter
-\def\fps@figure{htbp}
-\makeatother
-$endif$
-$if(links-as-notes)$
-% Make links footnotes instead of hotlinks:
-\DeclareRobustCommand{\href}[2]{#2\footnote{\url{#1}}}
-$endif$
-$if(strikeout)$
-\usepackage[normalem]{ulem}
-% Avoid problems with \sout in headers with hyperref
-\pdfstringdefDisableCommands{\renewcommand{\sout}{}}
-$endif$
-\setlength{\emergencystretch}{3em} % prevent overfull lines
-\providecommand{\tightlist}{%
-  \setlength{\itemsep}{0pt}\setlength{\parskip}{0pt}}
-$if(numbersections)$
-\setcounter{secnumdepth}{$if(secnumdepth)$$secnumdepth$$else$5$endif$}
-$else$
-\setcounter{secnumdepth}{-\maxdimen} % remove section numbering
-$endif$
-$if(beamer)$
-$else$
-$if(block-headings)$
-% Make \paragraph and \subparagraph free-standing
-\ifx\paragraph\undefined\else
-  \let\oldparagraph\paragraph
-  \renewcommand{\paragraph}[1]{\oldparagraph{#1}\mbox{}}
-\fi
-\ifx\subparagraph\undefined\else
-  \let\oldsubparagraph\subparagraph
-  \renewcommand{\subparagraph}[1]{\oldsubparagraph{#1}\mbox{}}
-\fi
-$endif$
-$endif$
-$if(pagestyle)$
-\pagestyle{$pagestyle$}
-$endif$
-$for(header-includes)$
-$header-includes$
-$endfor$
-$if(lang)$
-\ifxetex
-  % Load polyglossia as late as possible: uses bidi with RTL langages (e.g. Hebrew, Arabic)
-  \usepackage{polyglossia}
-  \setmainlanguage[$for(polyglossia-lang.options)$$polyglossia-lang.options$$sep$,$endfor$]{$polyglossia-lang.name$}
-$for(polyglossia-otherlangs)$
-  \setotherlanguage[$for(polyglossia-otherlangs.options)$$polyglossia-otherlangs.options$$sep$,$endfor$]{$polyglossia-otherlangs.name$}
-$endfor$
-\else
-  \usepackage[shorthands=off,$for(babel-otherlangs)$$babel-otherlangs$,$endfor$main=$babel-lang$]{babel}
-$if(babel-newcommands)$
-  $babel-newcommands$
-$endif$
-\fi
-$endif$
-\ifluatex
-  \usepackage{selnolig}  % disable illegal ligatures
-\fi
-$if(dir)$
-\ifxetex
-  % Load bidi as late as possible as it modifies e.g. graphicx
-  \usepackage{bidi}
-\fi
-\ifnum 0\ifxetex 1\fi\ifluatex 1\fi=0 % if pdftex
-  \TeXXeTstate=1
-  \newcommand{\RL}[1]{\beginR #1\endR}
-  \newcommand{\LR}[1]{\beginL #1\endL}
-  \newenvironment{RTL}{\beginR}{\endR}
-  \newenvironment{LTR}{\beginL}{\endL}
-\fi
-$endif$
-$if(natbib)$
-\usepackage[$natbiboptions$]{natbib}
-\bibliographystyle{$if(biblio-style)$$biblio-style$$else$plainnat$endif$}
-$endif$
-$if(biblatex)$
-\usepackage[$if(biblio-style)$style=$biblio-style$,$endif$$for(biblatexoptions)$$biblatexoptions$$sep$,$endfor$]{biblatex}
-$for(bibliography)$
-\addbibresource{$bibliography$}
-$endfor$
-$endif$
-$if(csl-refs)$
-\newlength{\cslhangindent}
-\setlength{\cslhangindent}{1.5em}
-\newlength{\csllabelwidth}
-\setlength{\csllabelwidth}{3em}
-\newenvironment{CSLReferences}[3] % #1 hanging-ident, #2 entry spacing
- {% don't indent paragraphs
-  \setlength{\parindent}{0pt}
-  % turn on hanging indent if param 1 is 1
-  \ifodd #1 \everypar{\setlength{\hangindent}{\cslhangindent}}\ignorespaces\fi
-  % set entry spacing
-  \ifnum #2 > 0
-  \setlength{\parskip}{#2\baselineskip}
-  \fi
- }%
- {}
-\usepackage{calc} % for \widthof, \maxof
-\newcommand{\CSLBlock}[1]{#1\hfill\break}
-\newcommand{\CSLLeftMargin}[1]{\parbox[t]{\maxof{\widthof{#1}}{\csllabelwidth}}{#1}}
-\newcommand{\CSLRightInline}[1]{\parbox[t]{\linewidth}{#1}}
-\newcommand{\CSLIndent}[1]{\hspace{\cslhangindent}#1}
-$endif$
-
-$if(title)$
-\title{$title$$if(thanks)$\thanks{$thanks$}$endif$}
-$endif$
-$if(subtitle)$
-$if(beamer)$
-$else$
-\usepackage{etoolbox}
-\makeatletter
-\providecommand{\subtitle}[1]{% add subtitle to \maketitle
-  \apptocmd{\@title}{\par {\large #1 \par}}{}{}
-}
-\makeatother
-$endif$
-\subtitle{$subtitle$}
-$endif$
-\author{$for(author)$$author$$sep$ \and $endfor$}
-\date{$date$}
-$if(beamer)$
-$if(institute)$
-\institute{$for(institute)$$institute$$sep$ \and $endfor$}
-$endif$
-$if(titlegraphic)$
-\titlegraphic{\includegraphics{$titlegraphic$}}
-$endif$
-$if(logo)$
-\logo{\includegraphics{$logo$}}
-$endif$
-$endif$
-
-\begin{document}
-$if(has-frontmatter)$
-\frontmatter
-$endif$
-$if(title)$
-$if(beamer)$
-\frame{\titlepage}
-$else$
-\maketitle
-$endif$
-$if(abstract)$
-\begin{abstract}
-$abstract$
-\end{abstract}
-$endif$
-$endif$
-
-$for(include-before)$
-$include-before$
-
-$endfor$
-$if(toc)$
-$if(toc-title)$
-\renewcommand*\contentsname{$toc-title$}
-$endif$
-$if(beamer)$
-\begin{frame}[allowframebreaks]
-$if(toc-title)$
-  \frametitle{$toc-title$}
-$endif$
-  \tableofcontents[hideallsubsections]
-\end{frame}
-$else$
-{
-$if(colorlinks)$
-\hypersetup{linkcolor=$if(toccolor)$$toccolor$$else$$endif$}
-$endif$
-\setcounter{tocdepth}{$toc-depth$}
-\tableofcontents
-}
-$endif$
-$endif$
-$if(lot)$
-\listoftables
-$endif$
-$if(lof)$
-\listoffigures
-$endif$
-$if(linestretch)$
-\setstretch{$linestretch$}
-$endif$
-$if(has-frontmatter)$
-\mainmatter
-$endif$
-$body$
-
-$if(has-frontmatter)$
-\backmatter
-$endif$
-$if(natbib)$
-$if(bibliography)$
-$if(biblio-title)$
-$if(has-chapters)$
-\renewcommand\bibname{$biblio-title$}
-$else$
-\renewcommand\refname{$biblio-title$}
-$endif$
-$endif$
-$if(beamer)$
-\begin{frame}[allowframebreaks]{$biblio-title$}
-  \bibliographytrue
-$endif$
-  \bibliography{$for(bibliography)$$bibliography$$sep$,$endfor$}
-$if(beamer)$
-\end{frame}
-$endif$
-
-$endif$
-$endif$
-$if(biblatex)$
-$if(beamer)$
-\begin{frame}[allowframebreaks]{$biblio-title$}
-  \bibliographytrue
-  \printbibliography[heading=none]
-\end{frame}
-$else$
-\printbibliography$if(biblio-title)$[title=$biblio-title$]$endif$
-$endif$
-
-$endif$
-$for(include-after)$
-$include-after$
-
-$endfor$
-\end{document}

themes/beamercolorthemeauriga.sty

@@ -1,29 +0,0 @@
-% Auriga theme
-% https://github.com/anishathalye/auriga
-
-% ====================
-% Definitions
-% ====================
-
-\definecolor{lightgray}{RGB}{245, 246, 250}
-\definecolor{darkgray}{RGB}{79,79,79}
-
-% ====================
-% Theme
-% ====================
-
-% Basic colors
-\setbeamercolor{palette primary}{fg=black,bg=white}
-\setbeamercolor{palette secondary}{fg=black,bg=white}
-\setbeamercolor{palette tertiary}{bg=black,fg=white}
-\setbeamercolor{palette quaternary}{fg=black,bg=white}
-\setbeamercolor{structure}{fg=darkgray}
-
-% Itemize
-\setbeamercolor{item}{fg=black}
-
-% Page numbering
-\setbeamercolor{page number in head/foot}{fg=structure.fg}
-
-% Frame titles
-\setbeamercolor{frametitle}{fg=black}

themes/beamerthemeauriga.sty

@@ -1,112 +0,0 @@
-% Auriga theme
-% https://github.com/anishathalye/auriga
-
-% ====================
-% Dependencies
-% ====================
-
-\RequirePackage{exscale}
-\RequirePackage{ragged2e}
-\RequirePackage{changepage}
-\RequirePackage{fontspec}
-\RequirePackage{xpatch}
-
-% ====================
-% Fonts
-% ====================
-
-\newfontfamily\Raleway[Ligatures=TeX]{Raleway}
-\newfontfamily\Lato[Ligatures=TeX]{Lato}
-
-\usefonttheme{professionalfonts}
-
-\setsansfont{Lato}[
-  UprightFont=*-Regular,
-  ItalicFont=*-Italic,
-  BoldFont=*-Bold,
-  BoldItalicFont=*-BoldItalic
-]
-\setmonofont{Hack}
-
-\setbeamerfont{title page}{family=\Raleway}
-\setbeamerfont{title page title}{size=\LARGE,series=\bfseries}
-\setbeamerfont{title page author}{size=\footnotesize}
-\setbeamerfont{title page institute}{size=\scriptsize}
-\setbeamerfont{frametitle}{family=\Raleway,size=\large,series=\bfseries}
-\setbeamerfont{caption}{size=\footnotesize}
-
-% ====================
-% Macros
-% ====================
-
-\newcommand{\samelineand}{\qquad}
-
-% ====================
-% Elements
-% ====================
-
-% Itemize
-
-\setbeamertemplate{itemize item}[circle]
-\setbeamertemplate{itemize subitem}[circle]
-\setbeamertemplate{itemize subsubitem}[circle]
-\xpatchcmd{\itemize}
-  {\def\makelabel}
-  {\ifnum\@itemdepth=1\relax
-     \setlength\itemsep{3ex}% separation for first level
-   \else
-     \ifnum\@itemdepth=2\relax
-       \setlength\itemsep{0.5ex}% separation for second level
-     \else
-       \ifnum\@itemdepth=3\relax
-         \setlength\itemsep{0.5ex}% separation for third level
-   \fi\fi\fi\def\makelabel
-  }
- {}
- {}
-
-% Equation
-\setlength\belowdisplayshortskip{2ex}
-
-% Caption
-\setlength{\abovecaptionskip}{2ex}
-\setlength{\belowcaptionskip}{1ex}
-\setbeamertemplate{caption}
-{
-    {\usebeamerfont{caption}\insertcaption}
-}
-
-% Navigation
-\beamertemplatenavigationsymbolsempty
-
-% ====================
-% Components
-% ====================
-
-% Title page
-\setbeamertemplate{title page}
-{
-    \begin{centering}
-        \vskip5ex plus 1filll
-        {\usebeamerfont{title page title}\usebeamercolor[fg]{title page}\inserttitle\\[1.5ex]}
-        {\usebeamerfont{title page author}\usebeamercolor[fg]{title page}\insertauthor\\[2ex]}
-        {\usebeamerfont{title page institute}\usebeamercolor[fg]{title page}\insertinstitute\\[1ex]}
-        \vskip0pt plus 1filll
-    \end{centering}
-}
-
-% Footer
-\setbeamertemplate{footline}{
-    \hfill%
-    \usebeamercolor[fg]{page number in head/foot}%
-    \usebeamerfont{page number in head/foot}%
-    \hspace{2em}%
-    \insertframenumber\kern1em\vskip2ex%
-}
-
-% Frame title
-\setbeamertemplate{frametitle}{
-    \nointerlineskip
-    \vskip2ex
-    {\usebeamerfont{frametitle}\usebeamercolor[fg]{frametitle}\insertframetitle}
-}