62 Commits

Author SHA1 Message Date
Alex Selimov
7a39612164 Add norefine option 2021-04-20 12:30:35 -04:00
Alex Selimov
db8428113d Changes to restart file format 2021-03-25 11:40:47 -04:00
Alex Selimov
8298c21503 Updates to metric and emrge and adding read_lmp 2021-03-19 12:23:57 -04:00
Alex Selimov
85135e7c95 More compatability fixes for new version of CAC 2021-03-06 01:49:29 -05:00
Alex Selimov
2e7571cfa5 Update to change style of restart and pycac.out files 2021-02-16 09:37:25 -05:00
Alex Selimov
fc8186f3a1 Update to match new cac inputs/output formats 2021-02-15 14:33:17 -05:00
Alex Selimov
fa5047b735 Fix to error checking in writing .xyz files 2020-12-04 12:17:09 -05:00
Alex Selimov
4f3d88b774 Fix to reading and writing .xyz data 2020-11-30 11:52:38 -05:00
Alex Selimov
f92e80f9db Added fixes to redef_box and to writing pycac restart files 2020-11-19 13:57:57 -05:00
Alex Selimov
0620a07847 Added some calc and metric changes 2020-11-02 19:50:03 -05:00
Alex Selimov
4dcaddb2cb Manual merge of control box code 2020-10-30 19:38:27 -04:00
Alex Selimov
068b5d99a9 Fix to gfortran compatibility 2020-10-28 17:51:23 -04:00
Alex Selimov
6e08517697 Working continuum metric calculation code 2020-10-20 01:03:31 -04:00
Alex Selimov
95e2ad0b4d Current working changes to control-box code 2020-10-19 15:14:12 -04:00
Alex Selimov
5949f04103 Working read from pycac.out file format 2020-10-16 19:48:06 -04:00
Alex Selimov
96e2242573 Fix to writing pycac files 2020-08-14 10:29:53 -04:00
Alex Selimov
724e573287 Added deform box option and allowed for reading time information from restart files 2020-08-10 15:52:19 -04:00
Alex Selimov
8d939ed942 Merge bcc to development branch 2020-07-06 16:17:55 -04:00
Alex Selimov
a0ecc7da90 Fix to problem with read-CAC due to changes in add_atom and add_element methods) 2020-06-30 11:00:02 -04:00
Alex Selimov
2fda952d3f Merge read-cac branch into main branch 2020-06-30 10:58:07 -04:00
Alex Selimov
a47c384a3f Added tags to the element and atom arrays 2020-06-29 18:51:01 -04:00
Alex Selimov
b52d7761e0 First working version of reading in .cac format. Works for two separate orientations 2020-06-02 16:42:12 -04:00
Alex Selimov
d01d0b0c57 Quick fix to code to allow for reading in larger numbers of esizes 2020-05-29 10:02:34 -04:00
Alex Selimov
080f19d644 Update .xyz file format to include element and atom files 2020-05-26 17:42:48 -04:00
Alex Selimov
32ab5a6058 Added basic basis functionality to code 2020-05-19 16:16:26 -04:00
Alex Selimov
3a59b23be7 Working bcc crystal structure when viewing in .lmp or .vtk format 2020-04-25 14:42:57 -04:00
Alex Selimov
4038cab76f Latest working changes to read-CAC 2020-04-23 12:17:04 -04:00
Alex Selimov
b3e05da6a4 Working changes for reading .cac files 2020-04-22 12:52:37 -04:00
Alex Selimov
e6d7741060 Working changes to io.f90 2020-04-21 13:25:55 -04:00
Alex Selimov
babf4e176d Current working changes 2020-04-09 17:51:47 -04:00
Alex Selimov
975e2b3fc1 Fix to numbering on interpolated atoms 2020-04-03 17:24:49 -04:00
Alex Selimov
4868a30e57 Added read_pycac subroutine 2020-03-20 10:48:36 -04:00
Alex Selimov
9038242b98 Changes to how the io works for writing restart and merging 2020-03-04 21:05:49 -05:00
Alex Selimov
27faeee5ea Working code which picks random position slightly outside element bounds 2020-03-02 12:24:22 -05:00
Alex
d670bb5083 Working remesh command and remesh max command 2020-02-28 09:36:33 -05:00
Alex
20755270a4 Debugging version of code 2020-02-24 12:58:13 -05:00
Alex Selimov
9702ec85e9 Added set max esize when reading in specific files 2020-02-14 12:19:51 -05:00
Alex Selimov
44efb4be4a Added orient and unorient options 2020-02-03 17:30:41 -05:00
Alex Selimov
4117f31cb6 Small fix to writing to restart format 2020-01-31 11:22:26 -05:00
Alex
dc42b7b925 Separated wrap option to reduce opy and pasted code. Fixed warnings and added wrapping when inserting a dislocation or loop 2020-01-29 10:25:33 -05:00
Alex Selimov
a942b8e2a1 Added -ow option which allows for automatic overwriting 2020-01-28 10:59:49 -05:00
Alex Selimov
9ebdfff0a1 Added print messages to let user know whats going on 2020-01-28 10:42:30 -05:00
Alex Selimov
0d2a351cd5 Fix to disl_gen. Problems with sub_box_bd and element dislocation displacement field 2020-01-27 20:30:40 -05:00
Alex
347b73054b Added group option and shift command 2020-01-27 10:01:22 -05:00
Alex
f80045058f quick fix to bug to write pycac format 2020-01-21 12:01:45 -05:00
Alex Selimov
12aa13b94b Fixes to element definitions 2020-01-17 13:53:21 -05:00
Alex Selimov
cde96402e2 Working shift command for merge 2020-01-15 16:44:13 -05:00
Alex Selimov
849da1d24a Changes to how the adjustment to nodal positions is performed for lammpscac output 2020-01-15 09:39:30 -05:00
Alex Selimov
c89b7d3b59 Merge branch 'ft--opt-dislloop' into development 2020-01-13 20:24:15 -05:00
Alex Selimov
fbae3a1594 Working version of CACmb capable of building simple models for lammpsCAC 2020-01-13 20:12:46 -05:00