57 Commits (fc8186f3a1a2282519c5e4b84119aa24326c25a0)

Author SHA1 Message Date
Alex Selimov fc8186f3a1 Update to match new cac inputs/output formats
3 years ago
Alex Selimov fa5047b735 Fix to error checking in writing .xyz files
3 years ago
Alex Selimov 4f3d88b774 Fix to reading and writing .xyz data
3 years ago
Alex Selimov f92e80f9db Added fixes to redef_box and to writing pycac restart files
4 years ago
Alex Selimov 0620a07847 Added some calc and metric changes
4 years ago
Alex Selimov 4dcaddb2cb Manual merge of control box code
4 years ago
Alex Selimov 068b5d99a9 Fix to gfortran compatibility
4 years ago
Alex Selimov 6e08517697 Working continuum metric calculation code
4 years ago
Alex Selimov 95e2ad0b4d Current working changes to control-box code
4 years ago
Alex Selimov 5949f04103 Working read from pycac.out file format
4 years ago
Alex Selimov 96e2242573 Fix to writing pycac files
4 years ago
Alex Selimov 724e573287 Added deform box option and allowed for reading time information from restart files
4 years ago
Alex Selimov 8d939ed942 Merge bcc to development branch
4 years ago
Alex Selimov a0ecc7da90 Fix to problem with read-CAC due to changes in add_atom and add_element methods)
4 years ago
Alex Selimov 2fda952d3f Merge read-cac branch into main branch
4 years ago
Alex Selimov a47c384a3f Added tags to the element and atom arrays
4 years ago
Alex Selimov b52d7761e0 First working version of reading in .cac format. Works for two separate orientations
4 years ago
Alex Selimov d01d0b0c57 Quick fix to code to allow for reading in larger numbers of esizes
4 years ago
Alex Selimov 080f19d644 Update .xyz file format to include element and atom files
4 years ago
Alex Selimov 32ab5a6058 Added basic basis functionality to code
4 years ago
Alex Selimov 3a59b23be7 Working bcc crystal structure when viewing in .lmp or .vtk format
4 years ago
Alex Selimov 4038cab76f Latest working changes to read-CAC
4 years ago
Alex Selimov b3e05da6a4 Working changes for reading .cac files
4 years ago
Alex Selimov e6d7741060 Working changes to io.f90
4 years ago
Alex Selimov babf4e176d Current working changes
4 years ago
Alex Selimov 975e2b3fc1 Fix to numbering on interpolated atoms
4 years ago
Alex Selimov 4868a30e57 Added read_pycac subroutine
4 years ago
Alex Selimov 9038242b98 Changes to how the io works for writing restart and merging
4 years ago
Alex Selimov 27faeee5ea Working code which picks random position slightly outside element bounds
4 years ago
Alex d670bb5083 Working remesh command and remesh max command
4 years ago
Alex 20755270a4 Debugging version of code
4 years ago
Alex Selimov 9702ec85e9 Added set max esize when reading in specific files
4 years ago
Alex Selimov 44efb4be4a Added orient and unorient options
4 years ago
Alex Selimov 4117f31cb6 Small fix to writing to restart format
4 years ago
Alex dc42b7b925 Separated wrap option to reduce opy and pasted code. Fixed warnings and added wrapping when inserting a dislocation or loop
4 years ago
Alex Selimov a942b8e2a1 Added -ow option which allows for automatic overwriting
4 years ago
Alex Selimov 9ebdfff0a1 Added print messages to let user know whats going on
4 years ago
Alex Selimov 0d2a351cd5 Fix to disl_gen. Problems with sub_box_bd and element dislocation displacement field
4 years ago
Alex 347b73054b Added group option and shift command
4 years ago
Alex f80045058f quick fix to bug to write pycac format
4 years ago
Alex Selimov 12aa13b94b Fixes to element definitions
4 years ago
Alex Selimov cde96402e2 Working shift command for merge
4 years ago
Alex Selimov 849da1d24a Changes to how the adjustment to nodal positions is performed for lammpscac output
4 years ago
Alex Selimov c89b7d3b59 Merge branch 'ft--opt-dislloop' into development
4 years ago
Alex Selimov fbae3a1594 Working version of CACmb capable of building simple models for lammpsCAC
4 years ago
Alex Selimov d09ebfa7e0 Merge branch 'development' into ft-write-lammpscac
4 years ago
Alex Selimov 20546dc267 Actual dislocation loop generation algorithm alongside dislgen command
4 years ago
Alex d0e6253d64 Working commit for dislocation generation branch
4 years ago
Alex Selimov b3a9577cc2 Added writing to pycac restart file format
4 years ago
Alex Selimov b0941e4482 Fixes to file reading to ensure that mode_merge works correctly
4 years ago