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Merge pull request #52 from pubs/feat/better-exceptions

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Better exceptions handling at the ui level.
main
Olivier Mangin 9 years ago
parent e3df872e65 2d9fa9af94
commit b4d066e1f9
16 changed files with 185 additions and 173 deletions
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37
pubs/commands/add_cmd.py
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@ -104,11 +104,7 @@ def command(conf, args):
ui.error('citekey already exist {}.'.format(citekey)) ui.error('citekey already exist {}.'.format(citekey))
ui.exit(1) ui.exit(1)
try: p = paper.Paper.from_bibentry(bibentry, citekey=citekey)
p = paper.Paper.from_bibentry(bibentry, citekey=citekey)
except Exception as e:
ui.error(e.args[0])
ui.exit(1)
# tags # tags
@ -132,21 +128,16 @@ def command(conf, args):
if move is None: if move is None:
move = conf['main']['doc_add'] == 'move' move = conf['main']['doc_add'] == 'move'
try: rp.push_paper(p)
rp.push_paper(p) ui.message('added to pubs:\n{}'.format(pretty.paper_oneliner(p)))
ui.message('added to pubs:\n{}'.format(pretty.paper_oneliner(p))) if docfile is not None:
if docfile is not None: rp.push_doc(p.citekey, docfile, copy=copy or args.move)
rp.push_doc(p.citekey, docfile, copy=copy or args.move) if copy:
if copy: if move:
if move: content.remove_file(docfile)
content.remove_file(docfile)
if copy:
if copy: if move:
if move: ui.message('{} was moved to the pubs repository.'.format(docfile))
ui.message('{} was moved to the pubs repository.'.format(docfile)) else:
else: ui.message('{} was copied to the pubs repository.'.format(docfile))
ui.message('{} was copied to the pubs repository.'.format(docfile))
except ValueError as v:
ui.error(v.message)
ui.exit(1)

39
pubs/commands/doc_cmd.py
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@ -65,26 +65,19 @@ def command(conf, args):
if not ui.input_yn(question=msg, default='n'): if not ui.input_yn(question=msg, default='n'):
ui.exit(0) ui.exit(0)
else: else:
try: rp.remove_doc(paper.citekey)
rp.remove_doc(paper.citekey)
except (ValueError, IOError) as v:
ui.error(v.message)
ui.exit(1)
try: document = args.document[0]
document = args.document[0] if args.link:
if args.link: rp.push_doc(paper.citekey, document, copy=False)
rp.push_doc(paper.citekey, document, copy=False) else:
else: rp.push_doc(paper.citekey, document, copy=True)
rp.push_doc(paper.citekey, document, copy=True) if not args.link and args.move:
if not args.link and args.move: content.remove_file(document)
content.remove_file(document)
ui.message('{} added to {}'.format(
ui.message('{} added to {}'.format(color.dye_out(document, 'filepath'), color.dye_out(document, 'filepath'),
color.dye_out(paper.citekey, 'citekey'))) color.dye_out(paper.citekey, 'citekey')))
except (ValueError, IOError) as v:
ui.error(v.message)
ui.exit(1)
elif args.action == 'remove': elif args.action == 'remove':
@ -103,11 +96,7 @@ def command(conf, args):
if not ui.input_yn(question=msg, default='n'): if not ui.input_yn(question=msg, default='n'):
continue continue
try: rp.remove_doc(paper.citekey)
rp.remove_doc(paper.citekey)
except (ValueError, IOError) as v:
ui.error(v.message)
ui.exit(1)
elif args.action == 'export': elif args.action == 'export':
@ -133,7 +122,7 @@ def command(conf, args):
dest_path = path + os.path.basename(real_doc_path) dest_path = path + os.path.basename(real_doc_path)
content.copy_content(real_doc_path, dest_path) content.copy_content(real_doc_path, dest_path)
except (ValueError, IOError) as e: except (ValueError, IOError) as e:
ui.error(e.message) ui.error(str(e))
elif args.action == 'open': elif args.action == 'open':
with_command = args.cmd with_command = args.cmd

32
pubs/commands/export_cmd.py
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@ -21,21 +21,17 @@ def command(conf, args):
ui = get_ui() ui = get_ui()
rp = repo.Repository(conf) rp = repo.Repository(conf)
try: papers = []
papers = [] if len(args.citekeys) < 1:
if len(args.citekeys) < 1: papers = rp.all_papers()
papers = rp.all_papers() else:
else: for key in resolve_citekey_list(repo=rp, citekeys=args.citekeys, ui=ui, exit_on_fail=True):
for key in resolve_citekey_list(repo=rp, citekeys=args.citekeys, ui=ui, exit_on_fail=True): papers.append(rp.pull_paper(key))
papers.append(rp.pull_paper(key))
bib = {}
bib = {} for p in papers:
for p in papers: bib[p.citekey] = p.bibdata
bib[p.citekey] = p.bibdata
exporter = endecoder.EnDecoder()
exporter = endecoder.EnDecoder() bibdata_raw = exporter.encode_bibdata(bib)
bibdata_raw = exporter.encode_bibdata(bib) ui.message(bibdata_raw)
ui.message(bibdata_raw)
except Exception as e:
ui.error(e.message)

31
pubs/commands/import_cmd.py
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@ -8,7 +8,7 @@ from .. import color
from ..paper import Paper from ..paper import Paper
from ..uis import get_ui from ..uis import get_ui
from ..content import system_path, read_file from ..content import system_path, read_text_file
def parser(subparsers): def parser(subparsers):
@ -45,7 +45,7 @@ def many_from_path(bibpath):
biblist = [] biblist = []
for filepath in all_files: for filepath in all_files:
biblist.append(coder.decode_bibdata(read_file(filepath))) biblist.append(coder.decode_bibdata(read_text_file(filepath)))
papers = {} papers = {}
for b in biblist: for b in biblist:
@ -74,20 +74,15 @@ def command(conf, args):
papers = many_from_path(bibpath) papers = many_from_path(bibpath)
keys = args.keys or papers.keys() keys = args.keys or papers.keys()
for k in keys: for k in keys:
try: p = papers[k]
p = papers[k] if isinstance(p, Exception):
if isinstance(p, Exception): ui.error(u'Could not load entry for citekey {}.'.format(k))
ui.error(u'Could not load entry for citekey {}.'.format(k)) else:
rp.push_paper(p)
ui.info(u'{} imported.'.format(color.dye_out(p.citekey, 'citekey')))
docfile = bibstruct.extract_docfile(p.bibdata)
if docfile is None:
ui.warning("No file for {}.".format(p.citekey))
else: else:
rp.push_paper(p) rp.push_doc(p.citekey, docfile, copy=copy)
ui.info(u'{} imported.'.format(color.dye_out(p.citekey, 'citekey'))) #FIXME should move the file if configured to do so.
docfile = bibstruct.extract_docfile(p.bibdata)
if docfile is None:
ui.warning("No file for {}.".format(p.citekey))
else:
rp.push_doc(p.citekey, docfile, copy=copy)
#FIXME should move the file if configured to do so.
except KeyError:
ui.error(u'No entry found for citekey {}.'.format(k))
except IOError as e:
ui.error(e.message)

7
pubs/commands/note_cmd.py
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@ -19,8 +19,5 @@ def command(conf, args):
ui = get_ui() ui = get_ui()
rp = repo.Repository(conf) rp = repo.Repository(conf)
citekey = resolve_citekey(rp, args.citekey, ui=ui, exit_on_fail=True) citekey = resolve_citekey(rp, args.citekey, ui=ui, exit_on_fail=True)
try: notepath = rp.databroker.real_notepath(citekey)
notepath = rp.databroker.real_notepath(citekey) content.edit_file(conf['main']['edit_cmd'], notepath, temporary=False)
content.edit_file(conf['main']['edit_cmd'], notepath, temporary=False)
except Exception as e:
ui.error(e.message)

4
pubs/commands/remove_cmd.py
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@ -26,13 +26,17 @@ def command(conf, args):
.format(', '.join([color.dye_out(c, 'citekey') for c in args.citekeys]))) .format(', '.join([color.dye_out(c, 'citekey') for c in args.citekeys])))
sure = ui.input_yn(question=are_you_sure, default='n') sure = ui.input_yn(question=are_you_sure, default='n')
if force or sure: if force or sure:
failed = False # Whether something failed
for c in keys: for c in keys:
try: try:
rp.remove_paper(c) rp.remove_paper(c)
except Exception as e: except Exception as e:
ui.error(e.message) ui.error(e.message)
failed = True
ui.message('The publication(s) [{}] were removed'.format( ui.message('The publication(s) [{}] were removed'.format(
', '.join([color.dye_out(c, 'citekey') for c in keys]))) ', '.join([color.dye_out(c, 'citekey') for c in keys])))
if failed:
ui.exit() # Exit with nonzero error code
# FIXME: print should check that removal proceeded well. # FIXME: print should check that removal proceeded well.
else: else:
ui.message('The publication(s) [{}] were {} removed'.format( ui.message('The publication(s) [{}] were {} removed'.format(

9
pubs/commands/rename_cmd.py
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@ -21,9 +21,6 @@ def command(conf, args):
rp = repo.Repository(conf) rp = repo.Repository(conf)
# TODO: here should be a test whether the new citekey is valid # TODO: here should be a test whether the new citekey is valid
try: key = resolve_citekey(repo=rp, citekey=args.citekey, ui=ui, exit_on_fail=True)
key = resolve_citekey(repo=rp, citekey=args.citekey, ui=ui, exit_on_fail=True) paper = rp.pull_paper(key)
paper = rp.pull_paper(key) rp.rename_paper(paper, args.new_citekey)
rp.rename_paper(paper, args.new_citekey)
except Exception as e:
ui.error(e.message)

3
pubs/config/spec.py
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@ -22,6 +22,9 @@ open_cmd = string(default=None)
# "kate --block" # "kate --block"
edit_cmd = string(default='') edit_cmd = string(default='')
# If true debug mode is on which means exceptions are not catched and
# the full python stack is printed.
debug = boolean(default=False)
[formating] [formating]

28
pubs/content.py
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@ -14,6 +14,18 @@ from .p3 import urlparse, HTTPConnection, urlopen
be prefixed by 'byte_' be prefixed by 'byte_'
""" """
class UnableToDecodeTextFile(Exception):
_msg = "unknown encoding (maybe not a text file) for: {}"
def __init__(self, path):
self.path = path
def __str__(self):
return self._msg.format(self.path)
# files i/o # files i/o
def _check_system_path_exists(path, fail=True): def _check_system_path_exists(path, fail=True):
@ -56,10 +68,14 @@ def check_directory(path, fail=True):
and _check_system_path_is(u'isdir', syspath, fail=fail)) and _check_system_path_is(u'isdir', syspath, fail=fail))
def read_file(filepath): def read_text_file(filepath):
check_file(filepath) check_file(filepath)
with _open(filepath, 'r') as f: try:
content = f.read() with _open(filepath, 'r') as f:
content = f.read()
except UnicodeDecodeError:
raise UnableToDecodeTextFile(filepath)
# Should "raise from". TODO once python 2 is droped.
return content return content
@ -120,7 +136,7 @@ def get_content(path, ui=None):
if content_type(path) == u'url': if content_type(path) == u'url':
return _get_byte_url_content(path, ui=ui).decode(encoding='utf-8') return _get_byte_url_content(path, ui=ui).decode(encoding='utf-8')
else: else:
return read_file(path) return read_text_file(path)
def move_content(source, target, overwrite=False): def move_content(source, target, overwrite=False):
@ -155,7 +171,7 @@ def editor_input(editor, initial=u'', suffix='.tmp'):
cmd = shlex.split(editor) # this enable editor command with option, e.g. gvim -f cmd = shlex.split(editor) # this enable editor command with option, e.g. gvim -f
cmd.append(tfile_name) cmd.append(tfile_name)
subprocess.call(cmd) subprocess.call(cmd)
content = read_file(tfile_name) content = read_text_file(tfile_name)
os.remove(tfile_name) os.remove(tfile_name)
return content return content
@ -163,7 +179,7 @@ def editor_input(editor, initial=u'', suffix='.tmp'):
def edit_file(editor, path_to_file, temporary=True): def edit_file(editor, path_to_file, temporary=True):
if temporary: if temporary:
check_file(path_to_file, fail=True) check_file(path_to_file, fail=True)
content = read_file(path_to_file) content = read_text_file(path_to_file)
content = editor_input(editor, content) content = editor_input(editor, content)
write_file(path_to_file, content) write_file(path_to_file, content)
else: else:

6
pubs/filebroker.py
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@ -2,7 +2,7 @@ import os
import re import re
from .p3 import urlparse from .p3 import urlparse
from .content import (check_file, check_directory, read_file, write_file, from .content import (check_file, check_directory, read_text_file, write_file,
system_path, check_content, content_type, get_content, system_path, check_content, content_type, get_content,
copy_content) copy_content)
@ -43,11 +43,11 @@ class FileBroker(object):
def pull_metafile(self, citekey): def pull_metafile(self, citekey):
filepath = os.path.join(self.metadir, citekey + '.yaml') filepath = os.path.join(self.metadir, citekey + '.yaml')
return read_file(filepath) return read_text_file(filepath)
def pull_bibfile(self, citekey): def pull_bibfile(self, citekey):
filepath = os.path.join(self.bibdir, citekey + '.bib') filepath = os.path.join(self.bibdir, citekey + '.bib')
return read_file(filepath) return read_text_file(filepath)
def push_metafile(self, citekey, metadata): def push_metafile(self, citekey, metadata):
"""Put content to disk. Will gladly override anything standing in its way.""" """Put content to disk. Will gladly override anything standing in its way."""

96
pubs/pubs_cmd.py
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@ -32,56 +32,56 @@ CORE_CMDS = collections.OrderedDict([
def execute(raw_args=sys.argv): def execute(raw_args=sys.argv):
conf_parser = argparse.ArgumentParser(prog="pubs", add_help=False) try:
conf_parser.add_argument("-c", "--config", help="path to config file", conf_parser = argparse.ArgumentParser(prog="pubs", add_help=False)
type=str, metavar="FILE") conf_parser.add_argument("-c", "--config", help="path to config file",
conf_parser.add_argument('--force-colors', dest='force_colors', type=str, metavar="FILE")
action='store_true', default=False, conf_parser.add_argument('--force-colors', dest='force_colors',
help='color are not disabled when piping to a file or other commands') action='store_true', default=False,
#conf_parser.add_argument("-u", "--update", help="update config if needed", help='color are not disabled when piping to a file or other commands')
# default=False, action='store_true') #conf_parser.add_argument("-u", "--update", help="update config if needed",
top_args, remaining_args = conf_parser.parse_known_args(raw_args[1:]) # default=False, action='store_true')
top_args, remaining_args = conf_parser.parse_known_args(raw_args[1:])
if top_args.config:
conf_path = top_args.config if top_args.config:
else: conf_path = top_args.config
conf_path = config.get_confpath(verify=False) # will be checked on load else:
conf_path = config.get_confpath(verify=False) # will be checked on load
# Loading config
if len(remaining_args) > 0 and remaining_args[0] != 'init': # Loading config
try: if len(remaining_args) > 0 and remaining_args[0] != 'init':
conf = config.load_conf(path=conf_path, check=False) conf = config.load_conf(path=conf_path, check=False)
if update.update_check(conf, path=conf.filename): if update.update_check(conf, path=conf.filename):
# an update happened, reload conf. # an update happened, reload conf.
conf = config.load_conf(path=conf_path, check=False) conf = config.load_conf(path=conf_path, check=False)
config.check_conf(conf) config.check_conf(conf)
except IOError as e: else:
print('error: {}'.format(str(e))) conf = config.load_default_conf()
sys.exit() conf.filename = conf_path
else:
conf = config.load_default_conf() uis.init_ui(conf, force_colors=top_args.force_colors)
conf.filename = conf_path ui = uis.get_ui()
uis.init_ui(conf, force_colors=top_args.force_colors) parser = argparse.ArgumentParser(description="research papers repository",
ui = uis.get_ui() prog="pubs", add_help=True)
parser.add_argument('--version', action='version', version=__version__)
parser = argparse.ArgumentParser(description="research papers repository", subparsers = parser.add_subparsers(title="valid commands", dest="command")
prog="pubs", add_help=True) subparsers.required = True
parser.add_argument('--version', action='version', version=__version__)
subparsers = parser.add_subparsers(title="valid commands", dest="command") # Populate the parser with core commands
subparsers.required = True for cmd_name, cmd_mod in CORE_CMDS.items():
cmd_parser = cmd_mod.parser(subparsers)
# Populate the parser with core commands cmd_parser.set_defaults(func=cmd_mod.command)
for cmd_name, cmd_mod in CORE_CMDS.items():
cmd_parser = cmd_mod.parser(subparsers) # Extend with plugin commands
cmd_parser.set_defaults(func=cmd_mod.command) plugins.load_plugins(conf, ui)
for p in plugins.get_plugins().values():
# Extend with plugin commands p.update_parser(subparsers)
plugins.load_plugins(conf, ui)
for p in plugins.get_plugins().values(): # Parse and run appropriate command
p.update_parser(subparsers) args = parser.parse_args(remaining_args)
args.prog = "pubs" # FIXME?
# Parse and run appropriate command args.func(conf, args)
args = parser.parse_args(remaining_args)
args.prog = "pubs" # FIXME? except Exception as e:
args.func(conf, args) uis.get_ui().handle_exception(e)

29
pubs/repo.py
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@ -12,12 +12,26 @@ def _base27(n):
return _base27((n - 1) // 26) + chr(ord('a') + ((n - 1) % 26)) if n else '' return _base27((n - 1) // 26) + chr(ord('a') + ((n - 1) % 26)) if n else ''
class CiteKeyCollision(Exception): class CiteKeyError(Exception):
pass
default_message = "Wrong citekey: {}."
class InvalidReference(Exception): def __init__(self, citekey, message=None):
pass self.message = message
self.citekey = citekey
def __str__(self):
return self.message or self.default_msg.format(self.citekey)
class CiteKeyCollision(CiteKeyError):
default_message = "Citekey already in use: {}."
class CiteKeyNotFound(CiteKeyError):
default_message = "No entry found for citekey: {}."
class Repository(object): class Repository(object):
@ -63,7 +77,7 @@ class Repository(object):
citekey=citekey, citekey=citekey,
metadata=self.databroker.pull_metadata(citekey)) metadata=self.databroker.pull_metadata(citekey))
else: else:
raise InvalidReference('{} citekey not found'.format(citekey)) raise CiteKeyNotFound(citekey)
def push_paper(self, paper, overwrite=False, event=True): def push_paper(self, paper, overwrite=False, event=True):
""" Push a paper to disk """ Push a paper to disk
@ -73,7 +87,7 @@ class Repository(object):
""" """
bibstruct.check_citekey(paper.citekey) bibstruct.check_citekey(paper.citekey)
if (not overwrite) and (paper.citekey in self): if (not overwrite) and (paper.citekey in self):
raise CiteKeyCollision('citekey {} already in use'.format(paper.citekey)) raise CiteKeyCollision(paper.citekey)
if not paper.added: if not paper.added:
paper.added = datetime.now() paper.added = datetime.now()
self.databroker.push_bibentry(paper.citekey, paper.bibentry) self.databroker.push_bibentry(paper.citekey, paper.bibentry)
@ -130,7 +144,8 @@ class Repository(object):
else: else:
# check if new_citekey does not exists # check if new_citekey does not exists
if new_citekey in self: if new_citekey in self:
raise CiteKeyCollision("can't rename paper to {}, conflicting files exists".format(new_citekey)) msg = "Can't rename paper to {}, citekey already exists.".format(new_citekey)
raise CiteKeyCollision(new_citekey, message=msg)
# move doc file if necessary # move doc file if necessary
if self.databroker.in_docsdir(paper.docpath): if self.databroker.in_docsdir(paper.docpath):

8
pubs/uis.py
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@ -62,6 +62,7 @@ class PrintUI(object):
errors='replace') errors='replace')
self._stderr = codecs.getwriter(self.encoding)(_get_raw_stderr(), self._stderr = codecs.getwriter(self.encoding)(_get_raw_stderr(),
errors='replace') errors='replace')
self.debug = conf['main'].get('debug', False)
def message(self, *messages, **kwargs): def message(self, *messages, **kwargs):
kwargs['file'] = self._stdout kwargs['file'] = self._stdout
@ -82,6 +83,13 @@ class PrintUI(object):
def exit(self, error_code=1): def exit(self, error_code=1):
sys.exit(error_code) sys.exit(error_code)
def handle_exception(self, exc):
if self.debug:
raise exc
else:
self.error(ustr(exc))
self.exit()
class InputUI(PrintUI): class InputUI(PrintUI):
"""UI class. Stores configuration parameters and system information. """UI class. Stores configuration parameters and system information.

4
tests/test_filebroker.py
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@ -29,10 +29,10 @@ class TestFileBroker(fake_env.TestFakeFs):
fake_env.copy_dir(self.fs, os.path.join(os.path.dirname(__file__), 'testrepo'), 'testrepo') fake_env.copy_dir(self.fs, os.path.join(os.path.dirname(__file__), 'testrepo'), 'testrepo')
fb = filebroker.FileBroker('testrepo', create = True) fb = filebroker.FileBroker('testrepo', create = True)
bib_content = content.read_file('testrepo/bib/Page99.bib') bib_content = content.read_text_file('testrepo/bib/Page99.bib')
self.assertEqual(fb.pull_bibfile('Page99'), bib_content) self.assertEqual(fb.pull_bibfile('Page99'), bib_content)
meta_content = content.read_file('testrepo/meta/Page99.yaml') meta_content = content.read_text_file('testrepo/meta/Page99.yaml')
self.assertEqual(fb.pull_metafile('Page99'), meta_content) self.assertEqual(fb.pull_metafile('Page99'), meta_content)
def test_errors(self): def test_errors(self):

4
tests/test_repo.py
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@ -5,7 +5,7 @@ import dotdot
import fake_env import fake_env
import fixtures import fixtures
from pubs.repo import Repository, _base27, CiteKeyCollision, InvalidReference from pubs.repo import Repository, _base27, CiteKeyCollision, CiteKeyNotFound
from pubs.paper import Paper from pubs.paper import Paper
from pubs import config from pubs import config
@ -77,7 +77,7 @@ class TestUpdatePaper(TestRepo):
def test_update_new_key_removes_old(self): def test_update_new_key_removes_old(self):
paper = self.repo.pull_paper('turing1950computing') paper = self.repo.pull_paper('turing1950computing')
self.repo.rename_paper(paper, 'Turing1950') self.repo.rename_paper(paper, 'Turing1950')
with self.assertRaises(InvalidReference): with self.assertRaises(CiteKeyNotFound):
self.repo.pull_paper('turing1950computing') self.repo.pull_paper('turing1950computing')
self.assertNotIn('turing1950computing', self.repo) self.assertNotIn('turing1950computing', self.repo)

21
tests/test_usecase.py
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@ -140,6 +140,10 @@ class TestInit(CommandTestCase):
self.assertEqual(set(self.fs['os'].listdir(pubsdir)), self.assertEqual(set(self.fs['os'].listdir(pubsdir)),
{'bib', 'doc', 'meta', 'notes'}) {'bib', 'doc', 'meta', 'notes'})
def test_init_config(self):
self.execute_cmds(['pubs init'])
self.assertTrue(self.fs['os'].path.isfile(self.default_conf_path))
class TestAdd(DataCommandTestCase): class TestAdd(DataCommandTestCase):
@ -212,15 +216,13 @@ class TestAdd(DataCommandTestCase):
with self.assertRaises(SystemExit): with self.assertRaises(SystemExit):
self.execute_cmds(cmds) self.execute_cmds(cmds)
@unittest.expectedFailure # To be fixed
def test_leading_citekey_space(self): # def test_leading_citekey_space(self):
cmds = ['pubs init', # cmds = ['pubs init',
'pubs add /data/leadingspace.bib', # 'pubs add /data/leadingspace.bib',
'pubs rename LeadingSpace NoLeadingSpace', # 'pubs rename LeadingSpace NoLeadingSpace',
] # ]
self.execute_cmds(cmds) # self.execute_cmds(cmds)
class TestList(DataCommandTestCase): class TestList(DataCommandTestCase):
@ -538,7 +540,6 @@ class TestUsecase(DataCommandTestCase):
'pubs doc add --move data/pagerank.pdf Page99' 'pubs doc add --move data/pagerank.pdf Page99'
] ]
self.execute_cmds(cmds) self.execute_cmds(cmds)
self.assertTrue(self.fs['os'].path.isfile(self.default_conf_path))
self.assertFalse(self.fs['os'].path.exists('/data/pagerank.pdf')) self.assertFalse(self.fs['os'].path.exists('/data/pagerank.pdf'))
def test_doc_remove(self): def test_doc_remove(self):

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