197 Commits

Author SHA1 Message Date
Alex Selimov
2fda952d3f Merge read-cac branch into main branch 2020-06-30 10:58:07 -04:00
Alex Selimov
a47c384a3f Added tags to the element and atom arrays 2020-06-29 18:51:01 -04:00
Alex Selimov
de15d0f8ae Update to doc for remesh command 2020-06-08 22:11:37 -04:00
Alex Selimov
338587b7b7 Added sphere as a possible group shape 2020-06-04 12:13:42 -04:00
Alex Selimov
b52d7761e0 First working version of reading in .cac format. Works for two separate orientations 2020-06-02 16:42:12 -04:00
Alex Selimov
d01d0b0c57 Quick fix to code to allow for reading in larger numbers of esizes 2020-05-29 10:02:34 -04:00
Alex Selimov
65c2b380cd Added flip option to group to invert group selection 2020-05-27 14:53:44 -04:00
Alex Selimov
43025d0b67 Quick fix to efill code 2020-05-27 14:37:30 -04:00
Alex Selimov
aef9da49be Added greater range of element sizes 2020-05-26 17:43:12 -04:00
Alex Selimov
080f19d644 Update .xyz file format to include element and atom files 2020-05-26 17:42:48 -04:00
Alex Selimov
e5eec7a7cd Added random option which can be used to create vacancy fields 2020-05-26 11:51:46 -04:00
Alex Selimov
5dda0e3b81 Added efill option 2020-05-20 15:09:12 -04:00
Alex Selimov
8693d7aaa9 Initial testing of efill code 2020-05-20 11:59:49 -04:00
Alex Selimov
8cb9787ea2 Added functionality so you can refine elements prior to operating on the group 2020-05-20 11:07:21 -04:00
Alex Selimov
b28875b3e1 Added keyword for group selection based on nodal position instead of centroid 2020-05-20 09:51:02 -04:00
Alex Selimov
32ab5a6058 Added basic basis functionality to code 2020-05-19 16:16:26 -04:00
Alex Selimov
ffbe83f2f5 Added ability to have spaces in orient string if passed with quotes 2020-05-19 15:42:38 -04:00
Alex Selimov
66670671b5 Notch group shape 2020-05-18 13:50:14 -04:00
Alex Selimov
9ccc5f1caf Replaced sorting method which resulted in broken deletion algorithm 2020-05-18 10:38:01 -04:00
Alex Selimov
3a59b23be7 Working bcc crystal structure when viewing in .lmp or .vtk format 2020-04-25 14:42:57 -04:00
Alex Selimov
4f79085956 Update to documentation 2020-04-24 12:35:41 -04:00
Alex Selimov
4038cab76f Latest working changes to read-CAC 2020-04-23 12:17:04 -04:00
Alex Selimov
284fce3c17 Add group shape id 2020-04-22 16:21:05 -04:00
Alex Selimov
b3e05da6a4 Working changes for reading .cac files 2020-04-22 12:52:37 -04:00
Alex Selimov
e6d7741060 Working changes to io.f90 2020-04-21 13:25:55 -04:00
Alex Selimov
acd902db4b working changes to bcc files 2020-04-21 13:25:33 -04:00
Alex Selimov
f6c0cf93f2 Final changes fixing remesh group 2020-04-15 11:55:26 -04:00
Alex Selimov
babf4e176d Current working changes 2020-04-09 17:51:47 -04:00
Alex Selimov
9a484c86f6 Add wedge group shape option to opt_group.f90, update the documentation, and add the relevant functions to functions.f90 2020-04-07 11:42:37 -04:00
Alex Selimov
975e2b3fc1 Fix to numbering on interpolated atoms 2020-04-03 17:24:49 -04:00
Alex Selimov
fa24b59028 Merge branch 'ft--read_pycac' into 'development'
Ft  read pycac

See merge request aselimov/cacmb!1
2020-04-01 20:17:44 +00:00
Alex Selimov
a9b266d757 Added sbox_ori option for when reading in restart files 2020-03-20 13:14:26 -04:00
Alex Selimov
4868a30e57 Added read_pycac subroutine 2020-03-20 10:48:36 -04:00
Alex Selimov
697dd7fa83 Change minimium element size in max remesh 2020-03-20 10:47:17 -04:00
Alex Selimov
de1d230b87 Remove sub_box_arrary_bd as it isn't needed 2020-03-20 10:44:31 -04:00
aselimov
5b767038c2
Merge pull request #32 from aselimov/ft--add-square-vacancy-disloop
Added rectangular vacancy disloop
2020-03-18 10:18:23 -04:00
Alex Selimov
c11a1bb463 Added rectangular vacancy disloop 2020-03-17 11:21:02 -04:00
Alex Selimov
3d097fde1a Update to git ignore to clean directory 2020-03-13 16:07:10 -04:00
aselimov
6d8a4be625
Merge pull request #31 from aselimov/ft--vdisl-loop
vacancydisloop option added
2020-03-13 16:00:13 -04:00
Alex Selimov
fc20350748 vacancydisloop option added 2020-03-13 15:55:45 -04:00
aselimov
c800d3261a
Merge pull request #30 from aselimov/ft--update-boundary-command
Ft  update boundary command
2020-03-13 15:24:35 -04:00
Alex Selimov
44a9dbaead Add tol variable replacing lim_zero as a tolerance for real checks 2020-03-13 15:11:22 -04:00
Alex Selimov
6642c2a1b7 FIx to opt-orient command due to difference with how boundary command worked 2020-03-13 15:08:43 -04:00
Alex Selimov
0ad06a2d6b Working changes to boundary command 2020-03-05 16:19:30 -05:00
aselimov
80c931d77a
Merge pull request #29 from aselimov/master
Accidental push to master
2020-03-04 21:08:40 -05:00
aselimov
5a1676cd66
Merge pull request #28 from aselimov/ft--rand-element-pos
Ft  rand element pos
2020-03-04 21:07:11 -05:00
Alex Selimov
d2f3c9e3ec Add check for orientation to make sure it's right handed and orthogonal 2020-03-04 21:06:12 -05:00
Alex Selimov
9038242b98 Changes to how the io works for writing restart and merging 2020-03-04 21:05:49 -05:00
Alex Selimov
1a30968dca Added the rand element code 2020-03-04 21:04:39 -05:00
Alex Selimov
27faeee5ea Working code which picks random position slightly outside element bounds 2020-03-02 12:24:22 -05:00