Alex Selimov
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51079148cc
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Get code working with gfortran
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4 years ago |
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Alex Selimov
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f63335708b
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Working changes
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4 years ago |
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Alex Selimov
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22e250093b
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Working changes. Working on the efill code
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4 years ago |
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Alex Selimov
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b5629b1563
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Working changes to slip_plane code
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4 years ago |
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Alex Selimov
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2ea388b82a
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Current working changes with some updates to comments for accuracy
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4 years ago |
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Alex Selimov
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6e08517697
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Working continuum metric calculation code
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4 years ago |
Alex Selimov
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95e2ad0b4d
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Current working changes to control-box code
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4 years ago |
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Alex Selimov
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5949f04103
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Working read from pycac.out file format
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4 years ago |
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Alex Selimov
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dadc1f7a4a
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Fixed the efill option to preserve interelement discontinuities
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4 years ago |
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Alex Selimov
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c42db27f57
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Working redef box option
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4 years ago |
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Alex Selimov
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b658202a1e
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First testing version of code
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4 years ago |
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Alex Selimov
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fb236f4ab4
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Fix to opt_orient to preserve boundary conditions
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4 years ago |
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Alex Selimov
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1e1c08e546
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Added group shape all to seleect all of a specific type
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4 years ago |
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Alex Selimov
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73fca4a0d8
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Added efill zigzag code which adjusts the efill option
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4 years ago |
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Alex Selimov
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4c75fac13c
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Working change group type command
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4 years ago |
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Alex Selimov
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c4afde2743
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Working changes to group
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4 years ago |
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Alex Selimov
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96e2242573
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Fix to writing pycac files
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4 years ago |
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Alex Selimov
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724e573287
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Added deform box option and allowed for reading time information from restart files
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4 years ago |
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Alex Selimov
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8d939ed942
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Merge bcc to development branch
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5 years ago |
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Alex Selimov
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a0ecc7da90
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Fix to problem with read-CAC due to changes in add_atom and add_element methods)
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5 years ago |
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Alex Selimov
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2fda952d3f
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Merge read-cac branch into main branch
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5 years ago |
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Alex Selimov
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a47c384a3f
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Added tags to the element and atom arrays
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5 years ago |
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Alex Selimov
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338587b7b7
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Added sphere as a possible group shape
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5 years ago |
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Alex Selimov
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b52d7761e0
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First working version of reading in .cac format. Works for two separate orientations
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5 years ago |
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Alex Selimov
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d01d0b0c57
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Quick fix to code to allow for reading in larger numbers of esizes
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5 years ago |
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Alex Selimov
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65c2b380cd
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Added flip option to group to invert group selection
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5 years ago |
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Alex Selimov
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43025d0b67
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Quick fix to efill code
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5 years ago |
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Alex Selimov
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aef9da49be
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Added greater range of element sizes
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5 years ago |
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Alex Selimov
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080f19d644
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Update .xyz file format to include element and atom files
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5 years ago |
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Alex Selimov
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e5eec7a7cd
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Added random option which can be used to create vacancy fields
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5 years ago |
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Alex Selimov
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5dda0e3b81
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Added efill option
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5 years ago |
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Alex Selimov
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8693d7aaa9
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Initial testing of efill code
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5 years ago |
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Alex Selimov
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8cb9787ea2
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Added functionality so you can refine elements prior to operating on the group
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5 years ago |
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Alex Selimov
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b28875b3e1
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Added keyword for group selection based on nodal position instead of centroid
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5 years ago |
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Alex Selimov
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32ab5a6058
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Added basic basis functionality to code
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5 years ago |
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Alex Selimov
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ffbe83f2f5
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Added ability to have spaces in orient string if passed with quotes
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5 years ago |
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Alex Selimov
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66670671b5
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Notch group shape
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5 years ago |
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Alex Selimov
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9ccc5f1caf
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Replaced sorting method which resulted in broken deletion algorithm
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5 years ago |
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Alex Selimov
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3a59b23be7
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Working bcc crystal structure when viewing in .lmp or .vtk format
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5 years ago |
Alex Selimov
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4038cab76f
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Latest working changes to read-CAC
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5 years ago |
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Alex Selimov
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284fce3c17
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Add group shape id
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5 years ago |
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Alex Selimov
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b3e05da6a4
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Working changes for reading .cac files
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5 years ago |
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Alex Selimov
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e6d7741060
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Working changes to io.f90
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5 years ago |
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Alex Selimov
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acd902db4b
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working changes to bcc files
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5 years ago |
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Alex Selimov
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f6c0cf93f2
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Final changes fixing remesh group
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5 years ago |
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Alex Selimov
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babf4e176d
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Current working changes
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5 years ago |
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Alex Selimov
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9a484c86f6
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Add wedge group shape option to opt_group.f90, update the documentation, and add the relevant functions to functions.f90
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5 years ago |
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Alex Selimov
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975e2b3fc1
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Fix to numbering on interpolated atoms
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5 years ago |
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Alex Selimov
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a9b266d757
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Added sbox_ori option for when reading in restart files
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5 years ago |
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Alex Selimov
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4868a30e57
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Added read_pycac subroutine
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5 years ago |
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Alex Selimov
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697dd7fa83
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Change minimium element size in max remesh
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5 years ago |
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Alex Selimov
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de1d230b87
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Remove sub_box_arrary_bd as it isn't needed
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5 years ago |
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Alex Selimov
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c11a1bb463
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Added rectangular vacancy disloop
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5 years ago |
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Alex Selimov
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fc20350748
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vacancydisloop option added
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5 years ago |
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Alex Selimov
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44a9dbaead
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Add tol variable replacing lim_zero as a tolerance for real checks
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5 years ago |
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Alex Selimov
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6642c2a1b7
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FIx to opt-orient command due to difference with how boundary command worked
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5 years ago |
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Alex Selimov
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0ad06a2d6b
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Working changes to boundary command
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5 years ago |
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Alex Selimov
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d2f3c9e3ec
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Add check for orientation to make sure it's right handed and orthogonal
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5 years ago |
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Alex Selimov
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9038242b98
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Changes to how the io works for writing restart and merging
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5 years ago |
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Alex Selimov
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1a30968dca
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Added the rand element code
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5 years ago |
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Alex Selimov
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27faeee5ea
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Working code which picks random position slightly outside element bounds
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5 years ago |
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Alex
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d670bb5083
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Working remesh command and remesh max command
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5 years ago |
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Alex
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5b925122df
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Added verbosity to remesh command
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5 years ago |
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Alex
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09c2e63155
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Working element refinement
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5 years ago |
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Alex
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56994393a0
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Fix to bug causing incorrrect positions. Remeshing algorithm works
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5 years ago |
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Alex Selimov
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c698c31ede
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First version that doesn't crash, incorrectly places elements and atoms
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5 years ago |
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Alex
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20755270a4
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Debugging version of code
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5 years ago |
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Alex
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d0b6c595f0
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Fix to outputting single element
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5 years ago |
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Alex
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6a0d441bd0
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Fix to disloop code
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5 years ago |
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Alex Selimov
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1b82d98a4f
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Added right hand rule check to orientation in mode_create
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5 years ago |
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Alex Selimov
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9702ec85e9
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Added set max esize when reading in specific files
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5 years ago |
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Alex Selimov
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98d00ea431
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Fix problems with mode_create.f90
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5 years ago |
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Alex Selimov
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b97986bf04
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change box definition
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5 years ago |
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Alex Selimov
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3aed6966da
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Added possibility to select random number within range
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5 years ago |
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Alex Selimov
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a1a506e17d
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Added delete option with delete overlap command
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5 years ago |
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Alex Selimov
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92671ea0b2
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Fix to mode merge box definition
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5 years ago |
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Alex Selimov
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e9521f43f3
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Fix to formatting and cell neighbor loop algorithm
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5 years ago |
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Alex Selimov
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6f15daf1ec
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Initial working commit with bug in delete command
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5 years ago |
aselimov
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08aa5d46df
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Merge pull request #22 from aselimov/ft--option-orient
Ft option orient
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5 years ago |
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Alex Selimov
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9be65c4510
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Added delete option and update readme
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5 years ago |
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Alex Selimov
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f37f19cbcf
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Forgot to add the option file
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5 years ago |
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Alex Selimov
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44efb4be4a
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Added orient and unorient options
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5 years ago |
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Alex Selimov
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58ad74ca9a
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Quick add of boundary option and update to readme
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5 years ago |
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Alex Selimov
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4117f31cb6
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Small fix to writing to restart format
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5 years ago |
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Alex
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dc42b7b925
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Separated wrap option to reduce opy and pasted code. Fixed warnings and added wrapping when inserting a dislocation or loop
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5 years ago |
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Alex Selimov
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72dc7b089f
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Merge branch 'development' into ft--random-position-selector
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5 years ago |
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Alex Selimov
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282dcd3c58
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Add random position
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5 years ago |
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Alex Selimov
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a942b8e2a1
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Added -ow option which allows for automatic overwriting
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5 years ago |
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Alex Selimov
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9ebdfff0a1
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Added print messages to let user know whats going on
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5 years ago |
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aselimov
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e91bcd5d1e
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Merge pull request #16 from aselimov/ft--group-refine
Added remesh option to group
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5 years ago |
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Alex Selimov
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fd143783ec
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Added remesh option to group
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5 years ago |
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Alex Selimov
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1db2b24499
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Fixes to parse_pos subroutine
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5 years ago |
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Alex Selimov
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69ab46b6e3
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Fix to inf*val format for positions
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5 years ago |
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aselimov
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4e592fb4aa
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Merge pull request #15 from aselimov/bg--fix-to-dislgen
Bg fix to dislgen
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5 years ago |
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Alex Selimov
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99a680542d
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Extended inf commands to be position independent of the inf command
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5 years ago |
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Alex Selimov
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0d2a351cd5
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Fix to disl_gen. Problems with sub_box_bd and element dislocation displacement field
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5 years ago |
Kevin Chu
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1b099a17d5
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Fix to makefile build order
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5 years ago |
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Alex Selimov
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94e1c9fd7b
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Missing allocation in disloop code
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5 years ago |
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aselimov
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071e8169b9
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Merge pull request #13 from aselimov/ft--opt-dislloop
Square loop option
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5 years ago |
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Alex
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e76187bd3c
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Square loop option
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5 years ago |
